Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00687 ATGAGTTCATCACAAGAGCTGGTTTTGTTGGACTTACGGGCTAGCCCTTTTGCCACGAGGGTGAGGGTGGCTTTGGCAGAGAAGGGGCTAAACTGCGAGATAAAACAGGAAGATTTGAGTAACAAATCTCCTCTGCTTCTGGAGATGAACCCTGTACAAAAGCAAATCCCTGTTTTGATTCACAAAGGCAAGCCCATTCTCGAGTCTATCATAATCGTTGAATACATCGACGAGACATGGAGCAGTGAGGCAGGCTATGCTAATTTGCTTCCTTCCCATCCTTACGAGAGATCCCACGCTAGATTTTGGGCTGACTATGTGGACAAGAAGATCTACCCAAATGGAGGGAAGCTGTGGAACAAAAAGGATCTGACAGAGGAGGAGAAGGAAGCAGCAATGAAGGAGCTGATGGGGAGCTTCAAGCAGCTGGAGGAAGAGCTTGGAGACAAGCCCTATTTTGGAGGCCAATCATTTGGGTTTATAGATCTGTCGCTCATTCCATTTTACAGCATGTTTCTTGCCTTCAAATTGCTTGGAAATTTGGACTTGGAAGCTGAGTGTCCTAAGATCTTGGAATGGGCTAAGAGGTGCTGCCTCAGAGACACTGTCGCCAAAAGTATGCCCACTCAACAAGAGGTTTACGACGTCGTTTTGGATATTATAAAACGCCATTAG 675 46.22 MSSSQELVLLDLRASPFATRVRVALAEKGLNCEIKQEDLSNKSPLLLEMNPVQKQIPVLIHKGKPILESIIIVEYIDETWSSEAGYANLLPSHPYERSHARFWADYVDKKIYPNGGKLWNKKDLTEEEKEAAMKELMGSFKQLEEELGDKPYFGGQSFGFIDLSLIPFYSMFLAFKLLGNLDLEAECPKILEWAKRCCLRDTVAKSMPTQQEVYDVVLDIIKRH 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3407212 3408045 - CmoCh04G006870.1 Cmo04g00687 379662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00687 224 Gene3D - 93 224 - -
Cmo04g00687 224 Coils Coil 126 146 - -
Cmo04g00687 224 SFLD Glutathione Transferase (cytosolic) 4 219 IPR040079 -
Cmo04g00687 224 Pfam Glutathione S-transferase, C-terminal domain 127 196 - -
Cmo04g00687 224 SUPERFAMILY Thioredoxin-like 7 112 IPR036249 -
Cmo04g00687 224 Pfam Glutathione S-transferase, N-terminal domain 7 78 IPR004045 -
Cmo04g00687 224 PANTHER GLUTATHIONE S-TRANSFERASE, AMINO-TERMINAL DOMAIN PROTEIN 6 220 - -
Cmo04g00687 224 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 93 216 IPR010987 -
Cmo04g00687 224 Gene3D Glutaredoxin 1 92 - -
Cmo04g00687 224 SFLD Main.3: Omega- and Tau-like 4 219 IPR045073 -
Cmo04g00687 224 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 6 220 IPR045073 -
Cmo04g00687 224 CDD GST_N_Tau 7 80 - -
Cmo04g00687 224 CDD GST_C_Tau 94 220 IPR045074 GO:0004364|GO:0006749
Cmo04g00687 224 SUPERFAMILY GST C-terminal domain-like 78 222 IPR036282 -
Cmo04g00687 224 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00687 Cmo-Chr4:3407212 Cmo16g00499 Cmo-Chr16:2411394 4.81E-71 dispersed
Cmo04g00687 Cmo-Chr4:3407212 Cmo04g00688 Cmo-Chr4:3408834 1.34E-65 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00687 K00799 - rcu:8274525 276.944