Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00688 ATGGCGAATGAAGTGAAGCTGTTGGATTTCTGGCCCAGCATGTTTGGGATGCGAGTTAGAATAGCTCTGGCCGAGAAGGGCGTGGCGTACGAATACGTGGAAGAAGATCTGAGAAACAAGAGCCCTTTGCTTCTGCAGATGAACCCAATTCACAAGAAAATCCCTGTTCTTGTTCATAATGGAAAACCCATCTCCGAATCTTCCATTATCGTTCAGTACATCGATGAAACGTGGAAGGACAGAGCTCCTCTGTTGCCGTCTGATCCATACGAGAGGGCTCAAGCCAGGTTTTGGGTGGATTTCATCGACAAGAAGCTTTATGATGAAACGAGGAAGACATGGGGGAGCAAGGGAGAGGAGCAGGAGGCAGGGAAGAGGGGGATGATTGCAATTTTGAAGCAACTGGAGGAAGTTCTTGGGGAGAAGGCTTTCTTTGGAGGAGAGTGTTTGGGGTTCCTAGACATTGGTTTGATTGGATTCTCATCTTGGTTTTATAGCTATGAGACCATTGGGAAGTTCAGCATCGAGGCAGAGTGTCCCAAGATCATGGCTTGGGTGAAGAGATGCTTGCAGAAGGAGAGTGTTTCAAAGTCCCTGCCTGACCCCATGAAAGTCATGTTCGGGATGCGTGTTAGAATAGCTCTGGCTGAGAAGGGCGTGGCCTACGAATATGTGGAACAAGATCTGAAAAACAAGACCCCTTTGCTTCTGGAGATGAATCCAATTCACAAAAAGGTACCTGTTTTTGTTCATAATGGAAAACCCATCAGTGAATCTTCCATTATCATTCAGTACATTGATGAAGTATGGAAAGACAGAGCTCCTCTGTTGCCGTCTGATCCTTACGAGAGGGCTCAAGCCAGGTTCTGGGTGGATTTCATCGACAAGAAGCTTTACATTGAAACAAGGAAGATATACATGAGCAAGGGAGAAGAGCAGGAGACAGGCAAGAAGGAGGTGATAGCAATTTTGAAGCAAGTGGAAGCAGTTCTTGGGGAGAAGGCCTACTTTGGAGGAGAGTGTTTGGGGTTCATAGACATTGCCTTGATTGGATTCACATCTTGGTTTTATAGCTACGAAACCATTGGGAATTTCAGCATTGAAGCTGAGTGTCCCAAGATCATGGCTTGGGTGAAGAGATGCCTGCAAAAGGAGAGCGTTTCAAGCTCCCTGCCTGACCCCATCAAAGTCATCACTTCTTGCTTCAAGTCAGGAAAGCACTTGGCCTTGACTAACCAAATTGCTTCAGTCAGGAAGGACTTGGTGTGGATCAAAATGGATGAAATTTTTAGTGTTTGTGGTTGGGGTTTTGATATCTTCTCCCACTTTGATGCAGCGTACATGTTCGGGATGCGAGTCAAAGTAGCCCTGGCCATGAAGGGCGTGGCCTACGAATACGTAGAACAAGATCTAAGAAACAAGAGCCCTCTGCTTCTGGAAATGAACCCAATCCACAAGAAAATCCCTGTTCTTGTTCATAACGGAAAACCCATCTGTGAATCATCCATTATCGTTCAGTACATCGATGAAACGTGGAAGAACAGAGCTCCTCTGTTACCATCTGATCCATACGAGAGGGCTCAGGCCAGGTTTTGGGTGGATTTCATCGACAAGAAGGTGTTTGAGAGTGGGAGGAAGATCTGGGCTAGCAAGGGAGAGGAGCGTGAAGAAGGGAAGAAGGAGTTCATGGGAAGCTTGAAGAAGCTGGAGGAAGTTCTTGGGGAGAAGGCTTACTTTGGAGGCGAGAATGTGGGGTTTGTGGACATTGTTTTGATTGGATACTACACCTGGTTTTACAGCTACGAGAGCATTGGGAACTTGAGCGTTGAGGCAGAGTGCTCCAAGATACTGGGATGGGCTAAGAGATGCTTGCAAAATGAGAGCGTTTCTAACTCCCTGCCTGACCCCTTCAAGATCTGTGACTTTGTGCTTCTAATGAAGAAGAAGTATGGCCCTGAATGA 1962 46.64 MANEVKLLDFWPSMFGMRVRIALAEKGVAYEYVEEDLRNKSPLLLQMNPIHKKIPVLVHNGKPISESSIIVQYIDETWKDRAPLLPSDPYERAQARFWVDFIDKKLYDETRKTWGSKGEEQEAGKRGMIAILKQLEEVLGEKAFFGGECLGFLDIGLIGFSSWFYSYETIGKFSIEAECPKIMAWVKRCLQKESVSKSLPDPMKVMFGMRVRIALAEKGVAYEYVEQDLKNKTPLLLEMNPIHKKVPVFVHNGKPISESSIIIQYIDEVWKDRAPLLPSDPYERAQARFWVDFIDKKLYIETRKIYMSKGEEQETGKKEVIAILKQVEAVLGEKAYFGGECLGFIDIALIGFTSWFYSYETIGNFSIEAECPKIMAWVKRCLQKESVSSSLPDPIKVITSCFKSGKHLALTNQIASVRKDLVWIKMDEIFSVCGWGFDIFSHFDAAYMFGMRVKVALAMKGVAYEYVEQDLRNKSPLLLEMNPIHKKIPVLVHNGKPICESSIIVQYIDETWKNRAPLLPSDPYERAQARFWVDFIDKKVFESGRKIWASKGEEREEGKKEFMGSLKKLEEVLGEKAYFGGENVGFVDIVLIGYYTWFYSYESIGNLSVEAECSKILGWAKRCLQNESVSNSLPDPFKICDFVLLMKKKYGPE 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3408834 3412302 - CmoCh04G006880.1 Cmo04g00688 379663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 206 409 IPR045073 -
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 2 205 IPR045073 -
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 448 650 IPR045073 -
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 76 205 IPR036282 -
Cmo04g00688 653 CDD GST_C_Tau 281 398 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 207 299 IPR036249 -
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
Cmo04g00688 653 CDD GST_N_Tau 5 78 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 280 408 IPR010987 -
Cmo04g00688 653 Gene3D Glutaredoxin 208 279 - -
Cmo04g00688 653 CDD GST_C_Tau 89 206 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 310 384 IPR004046 -
Cmo04g00688 653 Gene3D - 88 207 - -
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 449 540 IPR036249 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 235 IPR010987 -
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 510 650 IPR036282 -
Cmo04g00688 653 Gene3D - 522 653 - -
Cmo04g00688 653 Gene3D - 280 410 - -
Cmo04g00688 653 CDD GST_C_Tau 523 646 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 268 394 IPR036282 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 437 516 IPR004045 -
Cmo04g00688 653 Gene3D Glutaredoxin 442 521 - -
Cmo04g00688 653 Gene3D Glutaredoxin 1 87 - -
Cmo04g00688 653 CDD GST_N_Tau 206 270 - -
Cmo04g00688 653 SFLD Main (cytGST) 206 409 - -
Cmo04g00688 653 SFLD Main (cytGST) 448 650 - -
Cmo04g00688 653 SFLD Main (cytGST) 2 205 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 522 642 IPR010987 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 205 399 IPR045073 -
Cmo04g00688 653 CDD GST_N_Tau 448 512 - -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 448 510 IPR004045 -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 207 268 IPR004045 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 446 646 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 205 399 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 206 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 446 646 IPR045073 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 206 IPR045073 -
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 124 188 - -
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 554 622 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 195 274 IPR004045 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00338 Cmo-Chr4:1659484 Cmo04g00688 Cmo-Chr4:3408834 5.71E-46 dispersed
Cmo04g00339 Cmo-Chr4:1664939 Cmo04g00688 Cmo-Chr4:3408834 5.72E-36 dispersed
Cmo04g00688 Cmo-Chr4:3408834 Cmo16g00499 Cmo-Chr16:2411394 1.32E-92 dispersed
Cmo16g00501 Cmo-Chr16:2417740 Cmo04g00688 Cmo-Chr4:3408834 9.45E-36 dispersed
Cmo04g00687 Cmo-Chr4:3407212 Cmo04g00688 Cmo-Chr4:3408834 1.34E-65 tandem
Cmo16g00500 Cmo-Chr16:2417204 Cmo04g00688 Cmo-Chr4:3408834 1.63E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00688 K00799 - csv:101218562 350.517