Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00688 ATGGCGAATGAAGTGAAGCTGTTGGATTTCTGGCCCAGCATGTTTGGGATGCGAGTTAGAATAGCTCTGGCCGAGAAGGGCGTGGCGTACGAATACGTGGAAGAAGATCTGAGAAACAAGAGCCCTTTGCTTCTGCAGATGAACCCAATTCACAAGAAAATCCCTGTTCTTGTTCATAATGGAAAACCCATCTCCGAATCTTCCATTATCGTTCAGTACATCGATGAAACGTGGAAGGACAGAGCTCCTCTGTTGCCGTCTGATCCATACGAGAGGGCTCAAGCCAGGTTTTGGGTGGATTTCATCGACAAGAAGCTTTATGATGAAACGAGGAAGACATGGGGGAGCAAGGGAGAGGAGCAGGAGGCAGGGAAGAGGGGGATGATTGCAATTTTGAAGCAACTGGAGGAAGTTCTTGGGGAGAAGGCTTTCTTTGGAGGAGAGTGTTTGGGGTTCCTAGACATTGGTTTGATTGGATTCTCATCTTGGTTTTATAGCTATGAGACCATTGGGAAGTTCAGCATCGAGGCAGAGTGTCCCAAGATCATGGCTTGGGTGAAGAGATGCTTGCAGAAGGAGAGTGTTTCAAAGTCCCTGCCTGACCCCATGAAAGTCATGTTCGGGATGCGTGTTAGAATAGCTCTGGCTGAGAAGGGCGTGGCCTACGAATATGTGGAACAAGATCTGAAAAACAAGACCCCTTTGCTTCTGGAGATGAATCCAATTCACAAAAAGGTACCTGTTTTTGTTCATAATGGAAAACCCATCAGTGAATCTTCCATTATCATTCAGTACATTGATGAAGTATGGAAAGACAGAGCTCCTCTGTTGCCGTCTGATCCTTACGAGAGGGCTCAAGCCAGGTTCTGGGTGGATTTCATCGACAAGAAGCTTTACATTGAAACAAGGAAGATATACATGAGCAAGGGAGAAGAGCAGGAGACAGGCAAGAAGGAGGTGATAGCAATTTTGAAGCAAGTGGAAGCAGTTCTTGGGGAGAAGGCCTACTTTGGAGGAGAGTGTTTGGGGTTCATAGACATTGCCTTGATTGGATTCACATCTTGGTTTTATAGCTACGAAACCATTGGGAATTTCAGCATTGAAGCTGAGTGTCCCAAGATCATGGCTTGGGTGAAGAGATGCCTGCAAAAGGAGAGCGTTTCAAGCTCCCTGCCTGACCCCATCAAAGTCATCACTTCTTGCTTCAAGTCAGGAAAGCACTTGGCCTTGACTAACCAAATTGCTTCAGTCAGGAAGGACTTGGTGTGGATCAAAATGGATGAAATTTTTAGTGTTTGTGGTTGGGGTTTTGATATCTTCTCCCACTTTGATGCAGCGTACATGTTCGGGATGCGAGTCAAAGTAGCCCTGGCCATGAAGGGCGTGGCCTACGAATACGTAGAACAAGATCTAAGAAACAAGAGCCCTCTGCTTCTGGAAATGAACCCAATCCACAAGAAAATCCCTGTTCTTGTTCATAACGGAAAACCCATCTGTGAATCATCCATTATCGTTCAGTACATCGATGAAACGTGGAAGAACAGAGCTCCTCTGTTACCATCTGATCCATACGAGAGGGCTCAGGCCAGGTTTTGGGTGGATTTCATCGACAAGAAGGTGTTTGAGAGTGGGAGGAAGATCTGGGCTAGCAAGGGAGAGGAGCGTGAAGAAGGGAAGAAGGAGTTCATGGGAAGCTTGAAGAAGCTGGAGGAAGTTCTTGGGGAGAAGGCTTACTTTGGAGGCGAGAATGTGGGGTTTGTGGACATTGTTTTGATTGGATACTACACCTGGTTTTACAGCTACGAGAGCATTGGGAACTTGAGCGTTGAGGCAGAGTGCTCCAAGATACTGGGATGGGCTAAGAGATGCTTGCAAAATGAGAGCGTTTCTAACTCCCTGCCTGACCCCTTCAAGATCTGTGACTTTGTGCTTCTAATGAAGAAGAAGTATGGCCCTGAATGA 1962 46.64 MANEVKLLDFWPSMFGMRVRIALAEKGVAYEYVEEDLRNKSPLLLQMNPIHKKIPVLVHNGKPISESSIIVQYIDETWKDRAPLLPSDPYERAQARFWVDFIDKKLYDETRKTWGSKGEEQEAGKRGMIAILKQLEEVLGEKAFFGGECLGFLDIGLIGFSSWFYSYETIGKFSIEAECPKIMAWVKRCLQKESVSKSLPDPMKVMFGMRVRIALAEKGVAYEYVEQDLKNKTPLLLEMNPIHKKVPVFVHNGKPISESSIIIQYIDEVWKDRAPLLPSDPYERAQARFWVDFIDKKLYIETRKIYMSKGEEQETGKKEVIAILKQVEAVLGEKAYFGGECLGFIDIALIGFTSWFYSYETIGNFSIEAECPKIMAWVKRCLQKESVSSSLPDPIKVITSCFKSGKHLALTNQIASVRKDLVWIKMDEIFSVCGWGFDIFSHFDAAYMFGMRVKVALAMKGVAYEYVEQDLRNKSPLLLEMNPIHKKIPVLVHNGKPICESSIIVQYIDETWKNRAPLLPSDPYERAQARFWVDFIDKKVFESGRKIWASKGEEREEGKKEFMGSLKKLEEVLGEKAYFGGENVGFVDIVLIGYYTWFYSYESIGNLSVEAECSKILGWAKRCLQNESVSNSLPDPFKICDFVLLMKKKYGPE 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3408834 3412302 - CmoCh04G006880.1 Cmo04g00688 379663

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 206 409 IPR045073 -
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 2 205 IPR045073 -
Cmo04g00688 653 SFLD Main.3: Omega- and Tau-like 448 650 IPR045073 -
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 76 205 IPR036282 -
Cmo04g00688 653 CDD GST_C_Tau 281 398 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 207 299 IPR036249 -
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 4 107 IPR036249 -
Cmo04g00688 653 CDD GST_N_Tau 5 78 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 280 408 IPR010987 -
Cmo04g00688 653 Gene3D Glutaredoxin 208 279 - -
Cmo04g00688 653 CDD GST_C_Tau 89 206 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 310 384 IPR004046 -
Cmo04g00688 653 Gene3D - 88 207 - -
Cmo04g00688 653 SUPERFAMILY Thioredoxin-like 449 540 IPR036249 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 235 IPR010987 -
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 510 650 IPR036282 -
Cmo04g00688 653 Gene3D - 522 653 - -
Cmo04g00688 653 Gene3D - 280 410 - -
Cmo04g00688 653 CDD GST_C_Tau 523 646 IPR045074 GO:0004364|GO:0006749
Cmo04g00688 653 SUPERFAMILY GST C-terminal domain-like 268 394 IPR036282 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 437 516 IPR004045 -
Cmo04g00688 653 Gene3D Glutaredoxin 442 521 - -
Cmo04g00688 653 Gene3D Glutaredoxin 1 87 - -
Cmo04g00688 653 CDD GST_N_Tau 206 270 - -
Cmo04g00688 653 SFLD Main (cytGST) 206 409 - -
Cmo04g00688 653 SFLD Main (cytGST) 448 650 - -
Cmo04g00688 653 SFLD Main (cytGST) 2 205 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 522 642 IPR010987 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 205 399 IPR045073 -
Cmo04g00688 653 CDD GST_N_Tau 448 512 - -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 448 510 IPR004045 -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 5 76 IPR004045 -
Cmo04g00688 653 Pfam Glutathione S-transferase, N-terminal domain 207 268 IPR004045 -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 446 646 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 205 399 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE PARC-RELATED 4 206 - -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 446 646 IPR045073 -
Cmo04g00688 653 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 4 206 IPR045073 -
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 124 188 - -
Cmo04g00688 653 Pfam Glutathione S-transferase, C-terminal domain 554 622 - -
Cmo04g00688 653 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 195 274 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00688 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - csv:101218562 350.517
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00338 Cmo-Chr4:1659484 Cmo04g00688 Cmo-Chr4:3408834 5.71E-46 dispersed
Cmo04g00339 Cmo-Chr4:1664939 Cmo04g00688 Cmo-Chr4:3408834 5.72E-36 dispersed
Cmo04g00688 Cmo-Chr4:3408834 Cmo16g00499 Cmo-Chr16:2411394 1.32E-92 dispersed
Cmo16g00501 Cmo-Chr16:2417740 Cmo04g00688 Cmo-Chr4:3408834 9.45E-36 dispersed
Cmo04g00687 Cmo-Chr4:3407212 Cmo04g00688 Cmo-Chr4:3408834 1.34E-65 tandem
Cmo16g00500 Cmo-Chr16:2417204 Cmo04g00688 Cmo-Chr4:3408834 1.63E-41 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo17g01082 CST 1 209 Glutathione S-transferase Gene Family AT4G02520 59.4 6.6e-65 244.6
Cmo08g00403 . 1 209 Glutathione S-transferase Gene Family AT4G02520 57.5 2.5e-64 242.7
Cmo08g00404 CST 5 221 Glutathione S-transferase Gene Family AT4G02520 54.5 1.0e-57 220.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT2G02930 60.6 2.1e-66 249.6
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT2G02930 58.7 8.6e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT2G02930 55.2 7.8e-58 221.1
Cmo08g00403 . 5 206 Glutathione S-transferase Gene Family AT1G02950 54.2 9.1e-61 231.1
Cmo17g01082 CST 3 206 Glutathione S-transferase Gene Family AT1G02950 55.1 1.4e-58 223.8
Cmo08g00404 CST 6 218 Glutathione S-transferase Gene Family AT1G02950 51.9 2.0e-55 213.4
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02930 58.6 2.9e-65 245.7
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02930 59.0 8.5e-65 244.2
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02930 53.2 1.7e-57 219.9
Cmo17g01082 CST 1 210 Glutathione S-transferase Gene Family AT1G02920 60.5 3.4e-66 248.8
Cmo08g00403 . 1 210 Glutathione S-transferase Gene Family AT1G02920 58.6 7.7e-66 247.7
Cmo08g00404 CST 5 222 Glutathione S-transferase Gene Family AT1G02920 54.6 7.0e-59 224.6
Cmo08g00403 . 1 215 Glutathione S-transferase Gene Family AT2G47730 58.3 1.9e-69 260.0
Cmo17g01082 CST 1 214 Glutathione S-transferase Gene Family AT2G47730 57.7 1.1e-64 244.2
Cmo08g00404 CST 4 225 Glutathione S-transferase Gene Family AT2G47730 53.4 3.0e-59 226.1
Cmo03g00394 . 3 216 Glutathione S-transferase Gene Family AT3G09270 52.1 8.2e-66 247.7
Cmo03g00395 . 3 213 Glutathione S-transferase Gene Family AT3G09270 52.4 3.8e-63 238.8
Cmo07g01074 . 3 213 Glutathione S-transferase Gene Family AT3G09270 51.9 2.2e-58 223.0
Cmo04g00338 . 4 219 Glutathione S-transferase Gene Family AT1G69930 51.2 2.7e-59 226.1
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59670 52.1 2.1e-56 216.5
Cmo04g00338 . 1 216 Glutathione S-transferase Gene Family AT1G59700 54.3 8.3e-61 231.1
Cmo04g00338 . 6 223 Glutathione S-transferase Gene Family AT1G10370 60.9 1.7e-74 276.6
Cmo04g00339 . 6 216 Glutathione S-transferase Gene Family AT1G10370 55.5 3.2e-65 245.7
Cmo04g00338 . 5 223 Glutathione S-transferase Gene Family AT1G10360 58.4 1.1e-70 263.8
Cmo04g00339 . 5 216 Glutathione S-transferase Gene Family AT1G10360 52.0 4.7e-61 231.9
Cmo04g00688 . 1 205 Glutathione S-transferase Gene Family AT1G78380 72.2 1.6e-85 313.2
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G78380 61.5 2.2e-71 266.2
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G78380 66.7 1.3e-36 150.6
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78370 65.5 7.0e-78 287.7
Cmo16g00499 . 1 188 Glutathione S-transferase Gene Family AT1G78370 58.9 5.9e-69 258.1
Cmo04g00687 . 8 213 Glutathione S-transferase Gene Family AT1G78370 51.5 1.8e-57 219.9
Cmo04g00688 . 1 212 Glutathione S-transferase Gene Family AT1G78340 62.0 1.1e-75 280.4
Cmo16g00499 . 1 189 Glutathione S-transferase Gene Family AT1G78340 61.4 4.8e-71 265.0
Cmo16g00500 . 1 96 Glutathione S-transferase Gene Family AT1G78340 68.8 3.5e-37 152.5
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G78320 52.9 3.0e-56 215.7
Cmo16g00499 . 1 184 Glutathione S-transferase Gene Family AT1G78320 50.7 4.2e-50 195.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17180 66.0 4.0e-81 298.5
Cmo16g00499 . 1 187 Glutathione S-transferase Gene Family AT1G17180 63.9 4.3e-75 278.5
Cmo14g02022 . 129 284 Glutathione S-transferase Gene Family AT1G17180 51.6 1.3e-39 160.6
Cmo06g01186 . 8 162 Glutathione S-transferase Gene Family AT1G17180 50.6 1.2e-37 154.1
Cmo16g00500 . 1 105 Glutathione S-transferase Gene Family AT1G17180 64.8 2.1e-37 153.3
Cmo04g00688 . 1 206 Glutathione S-transferase Gene Family AT1G17190 57.5 7.8e-69 257.7
Cmo16g00499 . 3 190 Glutathione S-transferase Gene Family AT1G17190 53.6 1.3e-63 240.4
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT3G43800 55.1 2.4e-65 246.1
Cmo04g00688 . 3 205 Glutathione S-transferase Gene Family AT1G53680 58.0 1.2e-64 243.8
Cmo04g00687 . 4 220 Glutathione S-transferase Gene Family AT1G53680 51.8 4.4e-59 225.3
Cmo16g00499 . 4 185 Glutathione S-transferase Gene Family AT1G53680 52.7 3.1e-57 219.2
Cmo02g00647 . 51 221 Glutathione S-transferase Gene Family AT2G02390 65.5 6.8e-61 231.1
Cmo02g00645 . 50 217 Glutathione S-transferase Gene Family AT2G02390 66.1 2.9e-59 225.7
Cmo06g01161 . 60 226 Glutathione S-transferase Gene Family AT2G02390 53.9 2.3e-48 189.5
Cmo02g00647 . 10 220 Glutathione S-transferase Gene Family AT2G02380 62.6 4.8e-74 275.0
Cmo02g00645 . 9 215 Glutathione S-transferase Gene Family AT2G02380 61.4 9.4e-70 260.8
Cmo06g01161 . 17 225 Glutathione S-transferase Gene Family AT2G02380 55.0 1.4e-62 236.9
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41210 68.8 9.5e-92 334.0
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41210 69.4 5.8e-89 324.7
Cmo16g00640 . 1 237 Glutathione S-transferase Gene Family AT5G41240 67.5 1.1e-88 325.1
Cmo04g00779 . 1 229 Glutathione S-transferase Gene Family AT5G41240 67.7 1.2e-84 311.6
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02780 68.9 3.6e-88 322.0
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02780 68.0 9.3e-84 307.4
Cmo04g01303 . 76 295 Glutathione S-transferase Gene Family AT5G02780 64.4 9.0e-79 290.8
Cmo04g01303 . 39 293 Glutathione S-transferase Gene Family AT3G55040 59.0 2.1e-82 303.1
Cmo06g00337 . 5 237 Glutathione S-transferase Gene Family AT3G55040 62.2 6.9e-81 298.1
Cmo06g00338 . 3 230 Glutathione S-transferase Gene Family AT3G55040 57.2 1.1e-75 280.8
Cmo06g00337 . 10 236 Glutathione S-transferase Gene Family AT5G02790 69.2 5.4e-92 334.7
Cmo06g00338 . 4 232 Glutathione S-transferase Gene Family AT5G02790 69.1 2.0e-91 332.8
Cmo04g01303 . 62 295 Glutathione S-transferase Gene Family AT5G02790 62.1 8.6e-82 300.8
Cmo04g00243 . 1 211 Glutathione S-transferase Gene Family AT1G19570 67.5 3.9e-81 298.5
Cmo04g01285 . 1 211 Glutathione S-transferase Gene Family AT1G19570 65.1 1.8e-78 289.7
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G19570 61.4 7.8e-74 274.2
Cmo04g00242 . 32 242 Glutathione S-transferase Gene Family AT1G19570 62.3 1.6e-71 266.5
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G19570 76.5 4.3e-40 162.2
Cmo04g00243 . 256 465 Glutathione S-transferase Gene Family AT1G75270 73.0 2.5e-88 322.4
Cmo04g01285 . 1 212 Glutathione S-transferase Gene Family AT1G75270 70.9 1.8e-86 316.2
Cmo04g00242 . 32 243 Glutathione S-transferase Gene Family AT1G75270 65.3 1.3e-76 283.5
Cmo14g00834 . 66 274 Glutathione S-transferase Gene Family AT1G75270 63.3 2.4e-75 279.3
Cmo04g00245 . 1 98 Glutathione S-transferase Gene Family AT1G75270 77.6 1.5e-40 163.7
Cmo14g00834 . 55 276 Glutathione S-transferase Gene Family AT5G16710 77.0 1.2e-100 363.6
Cmo04g00243 . 256 463 Glutathione S-transferase Gene Family AT5G16710 60.1 1.0e-72 270.8
Cmo04g01285 . 3 210 Glutathione S-transferase Gene Family AT5G16710 59.1 1.3e-70 263.8
Cmo04g00242 . 20 241 Glutathione S-transferase Gene Family AT5G16710 52.3 3.4e-63 239.2
Cmo09g00759 CST 1 267 Glutathione S-transferase Gene Family AT1G77290 69.3 2.3e-107 386.0
Cmo01g01417 CST 1 270 Glutathione S-transferase Gene Family AT1G77290 67.8 2.8e-105 379.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000291 5 5 16 3 3 4 0 3 4 5 2 4 5 4 5 5 4 4 3 4 3 8 4 5 5 8 2 4 1 17 145
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00688 Cmo_Chr04 FPKM 21.360001 24.203402 3.741493 1.562209 17.370584 16.771717 14.042419 0.379183 1.215021 0.578279