Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00689 ATGGCCTTGCAATTGCAAATGAGTTGGCAACCGAGTTTACTGAGTCAGAAGCGGCGAAATGGCCCCCCTCTCGGTCTCAGAAACCTAGGCAATACCTGCTACCTCAACAGCGTCCTTCAGTGCCTCACTTACACCCCTCCCCTTGCCAATTTCTGCCTTCGAAACCAGCACTCCTCTCTATGCGATTCTGCTTCCTCCAACGCGGAGAGAAAGCGTGAATGTCCGTTTTGTATTCTGGAAAGGCGTATAGTGAGGTCTTTGAGCTTGGATCTCACCTTGGACTCGCCTCTCAAGATCCAGAACTGTCTCAGGATCTTCGCCGAGCACTTTCGCTTGGGCCGCCAGGAGGACGCCCACGAGTTCCTTCGTTATGTCATCGACGCTTGCCACAACACCTGCCTCCGCTTGAAGAAGCTGCGTCGAACTGGTGGAGGTGCGAGTGGAAGCTCCACGGTGGTGAAGGAGATATTCGGGGGTGCCTTGCAGAGCCAGGTGAAGTGTTTATCTTGTGGAAACGACTCCAATAAGGTTGATGAGATAATGGATATTAGTCTTGATGTTTTGCATAGTAGTTCTCTTAAAGAGGCATTGCAGAAGTTCTTTCAACTGGAAGTTTTAGATGGCAGTAATAAGTACAAGTGTGACAATTGTAAGAAGTTGGTGGTGGCGAGGAAGCAGATGTCTATACTTCAAGCACCGAATACTCTTGTCGTCCAATTGAAGAGATTTGAAGGCATATTTGGTGGTAAGATTGACAAGGCCATTGCGTATGAGGAGAGTTTACAACTTTCAAATTTTATGTGCAAAGGAAGTCAGGATCCACGTCCAGAGTACAAGCTCTTTGGTACCATAGTGCATTCAGGCCTTTCTGCAGAATCTGGGCACTATTATGCATATATCAAGGATGCATCGGGTAGGTGGTATTGCTGCAACGACTCATTTGTTACAGTTTCAACTCTGCAGGAGGTCTTGTCAGAGAAGGTGTATATTCTCTTTTTCTCTCGTACGAACCAAAGGCCAGTAACTGCAAACGCACCTCTTGGTTCAAATGGTGTAAAATCTCATGAAGGTAATGGCATTGAAGCATCCAAAATCTCAAAACCTTCTGCGGTAACTAAAATAGCACAGACAAAATCCCATGTCGAGCAATCTTCTCGGAAAGAACTTTCAAGTCTATCTAAGGTAGAAAAACCAACTTTCAGTCAGCGAGGAAAATCTTATATGAATGGACATTCTAATTCTGTACGAGCTCCTTCCACCATTAACGGGAAGATAGTTCTTGAGAAGGATCAATCCATCAAGGAGAACGAGAAAGAAAATGTAAACTCGTTGCATTTGGAAAATGGTGTGAGACATAAATCTTTTCTTGGGAATGGAAATAGCAAGAAAAGTAATGAAGTTGCTGATGATGTCACTGAGAGGGAACGTAAATCTGTGTTAATGAATGGTAATGGTAATGGCGAGAGTGTGGCAATGAAAGAAGATAAATACGATCAGTGTGATGGTAATCCTATGAATAACAAGTTCACTGCAGGAAATGGGTCTGGTCATGATGAAGTGGATAATGCAGTCAACTGCTCCTCTGAGATCAAAATGGCAAAAAGAAAATCAGACCTCTGTATCTTGTTTCAACAGGATGCTCTGTCTCGAAAAAGAGTTGAAGAACTGACAGAAGATCTCAAGAGAGAAACTTTCTCAGTTTTAAGAACATGCGGTTGGTCAAAGGAGGTCTTCAGTTGCATGCGTTCAAGGAAGAGATTGTGTTTACGAGAAATGGGGAGCACTCCAAGCAGTAACGATTTAAAGAAATTGCTGATTGCAGATGCCAAGCAAAAGTTTATTTCACGGATACCAGAAGCTCTAAAAGAGGACCTTATAAAAAAGCTTCAAGTATTTAGTCAAGAAAAGTAA 1911 43.43 MALQLQMSWQPSLLSQKRRNGPPLGLRNLGNTCYLNSVLQCLTYTPPLANFCLRNQHSSLCDSASSNAERKRECPFCILERRIVRSLSLDLTLDSPLKIQNCLRIFAEHFRLGRQEDAHEFLRYVIDACHNTCLRLKKLRRTGGGASGSSTVVKEIFGGALQSQVKCLSCGNDSNKVDEIMDISLDVLHSSSLKEALQKFFQLEVLDGSNKYKCDNCKKLVVARKQMSILQAPNTLVVQLKRFEGIFGGKIDKAIAYEESLQLSNFMCKGSQDPRPEYKLFGTIVHSGLSAESGHYYAYIKDASGRWYCCNDSFVTVSTLQEVLSEKVYILFFSRTNQRPVTANAPLGSNGVKSHEGNGIEASKISKPSAVTKIAQTKSHVEQSSRKELSSLSKVEKPTFSQRGKSYMNGHSNSVRAPSTINGKIVLEKDQSIKENEKENVNSLHLENGVRHKSFLGNGNSKKSNEVADDVTERERKSVLMNGNGNGESVAMKEDKYDQCDGNPMNNKFTAGNGSGHDEVDNAVNCSSEIKMAKRKSDLCILFQQDALSRKRVEELTEDLKRETFSVLRTCGWSKEVFSCMRSRKRLCLREMGSTPSSNDLKKLLIADAKQKFISRIPEALKEDLIKKLQVFSQEK 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3414434 3424998 - CmoCh04G006890.1 Cmo04g00689 379664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00689 636 Pfam Ubiquitin carboxyl-terminal hydrolase 25 333 IPR001394 GO:0004843|GO:0016579
Cmo04g00689 636 CDD Peptidase_C19E 23 334 - -
Cmo04g00689 636 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 25 40 IPR018200 GO:0004843|GO:0006511
Cmo04g00689 636 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 42 15 341 - -
Cmo04g00689 636 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 278 296 IPR018200 GO:0004843|GO:0006511
Cmo04g00689 636 MobiDBLite consensus disorder prediction 394 417 - -
Cmo04g00689 636 Gene3D Cysteine proteinases 18 338 - -
Cmo04g00689 636 MobiDBLite consensus disorder prediction 452 472 - -
Cmo04g00689 636 SUPERFAMILY Cysteine proteinases 17 335 IPR038765 -
Cmo04g00689 636 MobiDBLite consensus disorder prediction 376 417 - -
Cmo04g00689 636 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 15 341 - -
Cmo04g00689 636 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 24 336 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00689 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - csv:101218797 1081.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00689 Cmo09g00741 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00689 Cmo-Chr4:3414434 Cmo05g00577 Cmo-Chr5:2846988 4.51E-65 dispersed
Cmo08g00725 Cmo-Chr8:4553824 Cmo04g00689 Cmo-Chr4:3414434 9.52E-11 dispersed
Cmo17g00708 Cmo-Chr17:7156648 Cmo04g00689 Cmo-Chr4:3414434 6.84E-10 dispersed
Cmo12g00865 Cmo-Chr12:7886153 Cmo04g00689 Cmo-Chr4:3414434 7.97E-66 transposed
Cmo13g00424 Cmo-Chr13:5268005 Cmo04g00689 Cmo-Chr4:3414434 4.85E-14 transposed
Cmo16g00497 Cmo-Chr16:2400829 Cmo04g00689 Cmo-Chr4:3414434 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g945 . . . . . . . . . Cmo04g00689 . Cma09g00749 . . . . Cpe02g00634 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe03g00860 . . . . Cmo09g00741 . Cma16g00463 Car04g00597 Car16g00419 Cpe14g00389 Cpe01g00579 . . . . . . . Cla07g01006 Cam07g1081 Cec07g1153 Cco07g1131 . Cmu07g1046 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004811 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00689 Cmo_Chr04 FPKM 13.020393 14.468188 1.859897 1.639339 9.052999 7.233006 6.423109 0.100433 0.340459 0.0