Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00699 ATGGTGGTTTTGTCTGAGCCAGCTATCAAACAGATGGCTTCTTCCTACATGAGAAACTCCATGGCTGCTGCTGGTTCTTCCTCTGCTGCATTTTTCTCTGGGGTTCCGTTGATTGACCTTTCTGCACCAGATGCTAAGCATCTTATCGTCAAGGCCTGTGAAGAGCTTGGATTTTTCAAGGTCGTTAACCATGGCGTTCCCATGGAATTCATCTCCACTCTTGAATCAGAATCGACCAAATTCTTCTCCCTTCCCCTTTCTGAAAAACAGAGGGCCGGCCCCCCTTCTCCTTTTGGCTATGGCAATAAACAAATTGGCCGCAATGGCGACGTGGGCTGGGTTGAATATCTCCTCTTGAATACGCACCTTGAGTCCAACTCTGATGGGTTCCTCTCCATTTTTGGCCAAGACCCACAAAAGCTCCGCTCTGCTGTGAACGATTACATCTCGGCTGTGAGAAACATGGCGTGTGAAATCCTTGAACTCATGGCGGAAGGGTTGAAGATTCAGCAGAGGAATGCGTTCAGCAAGCTGTTGATGGATGAAGAGAGCGACTCTGTTTTCAGGGTGAACCATTACCCGCCATGTCCAGAGCTTCAAACTTTGAAAGGGACAAACATGATTGGATTTGGAGAACACACAGACCCACAGATCATTTCAGTTTTGAGATCGAATAACACTTCAGGACTTCAAATATCTCTTGCTGATGGGAATTGGATTTCCGTTCCTCCCGATCAAAGCTCCTTCTTCATCAACGTGACTCTTTACAGGTACAATAAACAACACGACAATCCAAACCCAGTTTTGATTTCGACCAAAGAAGTGATGACGAATGGAAGATTCAAAAGCGTGAAGCACAGAGTATTGACGAACAGGTTGAAGTCAAGAGTTTCAATGATATACTTCGGGGGGCCGCCGTTGAGTGAAAAGATAGCGCCGTTGCCTTCGCTTATGAAAGGAGAAGAAAGTTTGTACAAAGAGTTCACTTGGTTTGAGTACAAAAGATCAGCTTACAACTCCAGGTTGGCAGATAACAGGCTGGTGCACTTTGAGAGAATTGCAGCCTCGTGA 1071 46.03 MVVLSEPAIKQMASSYMRNSMAAAGSSSAAFFSGVPLIDLSAPDAKHLIVKACEELGFFKVVNHGVPMEFISTLESESTKFFSLPLSEKQRAGPPSPFGYGNKQIGRNGDVGWVEYLLLNTHLESNSDGFLSIFGQDPQKLRSAVNDYISAVRNMACEILELMAEGLKIQQRNAFSKLLMDEESDSVFRVNHYPPCPELQTLKGTNMIGFGEHTDPQIISVLRSNNTSGLQISLADGNWISVPPDQSSFFINVTLYRYNKQHDNPNPVLISTKEVMTNGRFKSVKHRVLTNRLKSRVSMIYFGGPPLSEKIAPLPSLMKGEESLYKEFTWFEYKRSAYNSRLADNRLVHFERIAAS 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3463934 3465435 - CmoCh04G006990.1 Cmo04g00699 379674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00699 356 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 183 305 IPR005123 -
Cmo04g00699 356 Pfam 2OG-Fe(II) oxygenase superfamily 185 303 IPR044861 -
Cmo04g00699 356 Pfam non-haem dioxygenase in morphine synthesis N-terminal 35 126 IPR026992 -
Cmo04g00699 356 PANTHER GIBBERELLIN 2-OXIDASE 25 353 - -
Cmo04g00699 356 PRINTS Isopenicillin N synthase signature 49 66 - -
Cmo04g00699 356 PRINTS Isopenicillin N synthase signature 213 234 - -
Cmo04g00699 356 Gene3D - 2 344 IPR027443 -
Cmo04g00699 356 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 25 353 - -
Cmo04g00699 356 SUPERFAMILY Clavaminate synthase-like 14 344 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00699 K04125 GA2ox; gibberellin 2beta-dioxygenase [EC:1.14.11.13] - csv:101215820 577.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00699 Cmo-Chr4:3463934 Cmo13g00566 Cmo-Chr13:6437135 1.76E-147 dispersed
Cmo16g00489 Cmo-Chr16:2353890 Cmo04g00699 Cmo-Chr4:3463934 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g897 . . . . . . . . . Cmo04g00699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00649 . Car04g00603 . . Cpe01g00585 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004421 1 1 2 3 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00699 Cmo_Chr04 FPKM 14.445251 16.46105 17.095451 19.442545 17.838032 19.479437 18.450653 27.535479 26.900446 27.52869