Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00701 ATGATGTCTGTCATATGCCAGAGCCTTGATTTTGGAAGGTATGTTTTGGATCATGTTGCTTGTGGCTGTTCTTCCAATACTCCATTGGATCGATGTGCGGTGAGGAGTTATGTTAAACCGTGTTCTAAGGGTAGAAACACGCGACACCAAACTCGAACTTTGATTTGTTCCCGAAGAAACATTGGGCAGTGCAGAGTGTTTTCAACTACCCAACCGGAAACTGTATTGAATAGCATTACTGGTGGTTCTCAACCATTCTTGGAACTGAGGAAGGAGCCCAGAACCCCAATCTCGTCGACAAATTTGTTTGAAGTTGTAGCCGATGATCTCCAGAAGCTTAACCAAAATCTTCTGTCTATGGTTGGTGAGGAGAACCCAGCTTTGGTCTCTGCTGCTCAGCGGATATTTGGTGCTGGAGGGAAGAGGATGAGACCAGCTCTAGTATTCCTGGTGTCAAGAGCAACGGCCGGATTAGTTGGGTTAGAGGAACTCACTGTGGAGCATCGACGTTTGGCAGAGATCATTGAAATGATCCACACTGCAAGCTTGATACACGACGATGTATTAGACGACAGCGATATGAGAAGAGAATATAATTTTATTTTGATAACCACCATCGGTTGCCCTATTGAACAAGAAGGGCCATGTAAATATAATAAAAGGCTAGCAAACGAGTTCAAGCTTGTCCACCTACTTAGGATTTCATATCCGACGAGGAAGGAAACCTTGCACCAATTATACGGTACCAGAGTGGCAGTGCTAGCTGGAGATTTCATGTTTGCACAGTCATCATGGTGTCTTGCTAACCTCGAAAATCTCGAAGTCATTAAGCTTATCAGTCAGGTTATAAAAGATTTTGCAAGTGGTGAAATAAAGCAGGCATCAAGCCTGTTTGATTGTGAAGTTGAACTTGAAGAGTATCTGACCAAAAGCTATTATAAAACAGCCTCCTTGATTGCTGCTAGCACGAAAGGTGCTGCGATCTTTAGCGGGGTTGATCGTGATACTACTGAGAAGATGTACGAGTATGGAAGGAATCTCGGTCTTTCGTTCCAAATTGTCGACGACATATTGGATTTTACACAATCGACAAAGCAGCTCGGAAAGCCAGCAGGAAGTGATCTGGCTAAAGGAAACCTTACAGCTCCAGTTATATTTGCTCTTGAGAGAGAGCCTAGACTGAAAGAAATTATCGAAACCGAATTCAGTGAGCCGGGGTCGCTAGAAGAAGCGATTGAATTAGTCAAGAGCAGGGGTGGCATTGAAAGAGCACAAGAATTAGCTAAACAGAAGGCAGATCTTGCTATCCAAAACCTACAATGCCTTCCAGAAGGAGTGTTTCGGTACGCGCTCGAGGATATGGTGACGTTTAATCTAGAACGGATCGATTAG 1392 43.97 MMSVICQSLDFGRYVLDHVACGCSSNTPLDRCAVRSYVKPCSKGRNTRHQTRTLICSRRNIGQCRVFSTTQPETVLNSITGGSQPFLELRKEPRTPISSTNLFEVVADDLQKLNQNLLSMVGEENPALVSAAQRIFGAGGKRMRPALVFLVSRATAGLVGLEELTVEHRRLAEIIEMIHTASLIHDDVLDDSDMRREYNFILITTIGCPIEQEGPCKYNKRLANEFKLVHLLRISYPTRKETLHQLYGTRVAVLAGDFMFAQSSWCLANLENLEVIKLISQVIKDFASGEIKQASSLFDCEVELEEYLTKSYYKTASLIAASTKGAAIFSGVDRDTTEKMYEYGRNLGLSFQIVDDILDFTQSTKQLGKPAGSDLAKGNLTAPVIFALEREPRLKEIIETEFSEPGSLEEAIELVKSRGGIERAQELAKQKADLAIQNLQCLPEGVFRYALEDMVTFNLERID 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3479202 3483094 - CmoCh04G007010.1 Cmo04g00701 379676

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00701 463 CDD Trans_IPPS_HT 123 461 IPR000092 GO:0008299
Cmo04g00701 463 ProSitePatterns Polyprenyl synthases signature 2. 347 359 IPR033749 -
Cmo04g00701 463 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 2 197 - -
Cmo04g00701 463 Pfam Polyprenyl synthetase 128 197 IPR000092 GO:0008299
Cmo04g00701 463 Pfam Polyprenyl synthetase 240 414 IPR000092 GO:0008299
Cmo04g00701 463 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 2 197 - -
Cmo04g00701 463 Gene3D Farnesyl Diphosphate Synthase 97 462 IPR008949 -
Cmo04g00701 463 PANTHER GERANYLGERANYL PYROPHOSPHATE SYNTHASE 238 463 - -
Cmo04g00701 463 PANTHER SOLANESYL DIPHOSPHATE SYNTHASE 2, CHLOROPLASTIC 238 463 - -
Cmo04g00701 463 SUPERFAMILY Terpenoid synthases 240 461 IPR008949 -
Cmo04g00701 463 SUPERFAMILY Terpenoid synthases 100 197 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00701 K05356 SPS, sds; all-trans-nonaprenyl-diphosphate synthase [EC:2.5.1.84 2.5.1.85] - csv:101214140 715.687
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01420 Cmo-Chr3:10267016 Cmo04g00701 Cmo-Chr4:3479202 4.83E-67 dispersed
Cmo04g00701 Cmo-Chr4:3479202 Cmo07g00777 Cmo-Chr7:3511881 3.49E-26 dispersed
Cmo16g00483 Cmo-Chr16:2309304 Cmo04g00701 Cmo-Chr4:3479202 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g6 . . . . Bpe09g00274 Bpe08g00996 Bma10g00467 . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1012 . . . . . Blo07g01003 Blo10g00715 . . . Bpe03g00882 Bma07g01157 . . . . . . Car04g00605 Car16g00425 . Cpe01g00589 . . . . . . . Cla07g00994 Cam07g1069 Cec07g1141 Cco07g1119 Clacu07g1042 Cmu07g1034 Cre07g1410 . . . .
Vvi19g848 . . . . . . . . . Cmo04g00701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00972 Blo10g00714 Bda05g00818 Bda12g00808 . . . . . . . Cma04g00653 . . . . Cpe01g00589 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006158 2 1 2 1 2 1 2 1 1 2 0 1 1 1 2 2 1 2 2 1 1 1 1 1 1 0 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00701 Cmo_Chr04 FPKM 5.373166 3.800993 1.876669 2.22875 0.756492 0.474326 0.910398 0.149703 0.126869 0.0