Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00702 ATGACGCAAGATCATCCAAAGAAGGAGGCCAAGAAGATCAACTTTTTTACTGAATATGGGGATGCTAATAGATATAAGATTCTTGAAGTTATAGGCAGGGGAAGTTACGGAGTTGTTTGTTCTGCTATAGACGTACAAACCAAAGAGAAAGTTGCAATAAAGAGAATTCATGACATATTTGATCATGTATCTGATGCTGTTCGAATCCTTCGTGAAGTTAAGTTGCTTAGATTGTTGCGGCATCCTGATATTGTTGATATCAAGCACATCATGTTGCCACCTTCTAAAAAGGAATTTAAGGACATTTATGTGGTGTTTGAGCTTATGGAATCTGATCTTCATCAAGTTATTAAAGCAAATGATGATTTGACCCGTGAACATCATCAGTTCTTCCTCTATCAAATGCTACGTGCATTGAAATTCATGCATACAGCAAATGTCTATCATAGAGATCTGAAGCCGAAGAATATACTGGCAAATGCTAATTGCAAGCTTAAAGTTTGTGATTTTGGACTTGCTAGAGCTGCTTTCAGCGATGTCCCAACTACAATATTTTGGACAGACTATGTTGCTACTAGATGGTATAGAGCTCCAGAGCTGTGTGGATCGTTCTGTTCAAAGGTAGGCAGTAAACTAGTTCACATTGATTCCTTCTACGAATTTTCGCAATCACTGGGATGCACCGTTACCATGACTTATGTTACATATGTTATTGATTGTCTCAATGTTGAAGCAACAATGTCCCCCCTGCTCCTCCCTCCACCACCATACAAGGAAAGATCAGAACAACATCTTGTAGTGATTTACTGGCCATGGTTCAGTTGGAAATGCTTTCCTTTTTGGTATAAAATGTATGTAATGTATAATAGTGGGGGGACTATTGAACTGTCCTGGAAGTTGAAATGTCTGTCATTCAGGTCAGGTTATATCTGTTTTTTTCTTAAGTTTTTGCTTAAACTTAGTTTCCCCTTTTTGTTTTCTAATTATACTCCCGCGATAGATATTTGGAGCATTGGCTGCATATTTGCTGAGGTTTTGATAGGGAAGCCACTGTTTCCTGGTAAAAGTGTTGCCCATCAACTGGAGTTAATTACTGATCTTCTTGGGACTCCCTCATTGGAAATCATTGCAGGAGTTCGGAACGAAAAGGCCAGGAAATATTTGACCGAAATGAGAAAGAAATCTCCAGTGCCGTTTTCACAAAGATTTCCCAATGCGGATCCTGCAGCCATCCGCTTATTACAAAGACTATTAGCATTTGATCCGAAGGATCGACCATCCGCTGTGGAGGCTCTGGCTGATCCTTACTTTAAGGGCCTAGCTAAAGTTGATAGAGAGCCTTCTTGTCAGCCAATATCAAGAGTGGAATTTGAGTTTGAGAGACGGAAATTAACAAAGGATGACATAAGGGAACTATTATACAGAGAAATATTAGAATATCATCCTCAAATTCGTGAAGATTATTTGAATAGAACTGAGACTACAAAGCTCCTCTATCCTAGGTTCAAATTCATTTTCCTCTTCAACCTTACAACATTCAATACTCCTATCATTGTCAGCGTTACAGGTCATTTTAGAAGCCAATTCACCTACCTCAAGGAGAATGGTGCTAAAAGCGCACCGGTTTTGCCTCTCGAACGGAAACACTTCTCCCTCCCACGTATAAGTTTTGTGTTCTTACAAGCTCAGTTTGCGAATCGTCTTCTTAGGTCCACGGTTTGCACAAATTTGGATTCACCTGATCGTGAACCGGATCGGCGAAATCCGAAAGTCTCTAATAACAGCATGGGATTATCTGATAGAAAGTTTGGGAATCCATCAAAGGCTCATCCTCCTCCCAAAGTGCCTACTGGTATGAACATATTTCTCTTTAGTGGACAAATCTTTCAAGCTCAACAATACCATGATACTGATATAACTGATATAGTTGCTTTCGCAAATCTAGGACGAGTTTCCGGGCCCGTTCTCCCATACGAGAACAGAAACATAACAAATGTTTATTCGAGACTAACATCACAAATTAGAAGTTTGGATTTGTGA 2040 39.61 MTQDHPKKEAKKINFFTEYGDANRYKILEVIGRGSYGVVCSAIDVQTKEKVAIKRIHDIFDHVSDAVRILREVKLLRLLRHPDIVDIKHIMLPPSKKEFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARAAFSDVPTTIFWTDYVATRWYRAPELCGSFCSKVGSKLVHIDSFYEFSQSLGCTVTMTYVTYVIDCLNVEATMSPLLLPPPPYKERSEQHLVVIYWPWFSWKCFPFWYKMYVMYNSGGTIELSWKLKCLSFRSGYICFFLKFLLKLSFPFLFSNYTPAIDIWSIGCIFAEVLIGKPLFPGKSVAHQLELITDLLGTPSLEIIAGVRNEKARKYLTEMRKKSPVPFSQRFPNADPAAIRLLQRLLAFDPKDRPSAVEALADPYFKGLAKVDREPSCQPISRVEFEFERRKLTKDDIRELLYREILEYHPQIREDYLNRTETTKLLYPRFKFIFLFNLTTFNTPIIVSVTGHFRSQFTYLKENGAKSAPVLPLERKHFSLPRISFVFLQAQFANRLLRSTVCTNLDSPDREPDRRNPKVSNNSMGLSDRKFGNPSKAHPPPKVPTGMNIFLFSGQIFQAQQYHDTDITDIVAFANLGRVSGPVLPYENRNITNVYSRLTSQIRSLDL 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3484679 3488534 - CmoCh04G007020.1 Cmo04g00702 379677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00702 679 MobiDBLite consensus disorder prediction 575 613 - -
Cmo04g00702 679 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 10 207 - -
Cmo04g00702 679 Pfam Protein kinase domain 328 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00702 679 Pfam Protein kinase domain 25 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00702 679 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo04g00702 679 CDD STKc_TDY_MAPK 24 482 - -
Cmo04g00702 679 SMART serkin_6 25 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00702 679 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 10 207 - -
Cmo04g00702 679 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Cmo04g00702 679 SUPERFAMILY Protein kinase-like (PK-like) 20 203 IPR011009 -
Cmo04g00702 679 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 325 507 - -
Cmo04g00702 679 Gene3D Phosphorylase Kinase; domain 1 23 108 - -
Cmo04g00702 679 ProSiteProfiles Protein kinase domain profile. 25 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00702 679 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 19 325 507 - -
Cmo04g00702 679 Gene3D Phosphorylase Kinase; domain 1 461 483 - -
Cmo04g00702 679 Gene3D Transferase(Phosphotransferase) domain 1 326 460 - -
Cmo04g00702 679 SUPERFAMILY Protein kinase-like (PK-like) 327 483 IPR011009 -
Cmo04g00702 679 Gene3D Transferase(Phosphotransferase) domain 1 109 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00702 Cmo-Chr4:3484679 Cmo19g01097 Cmo-Chr19:9403201 3.51E-96 dispersed
Cmo16g00482 Cmo-Chr16:2306493 Cmo04g00702 Cmo-Chr4:3484679 6.66E-153 transposed
Cmo16g00481 Cmo-Chr16:2304256 Cmo04g00702 Cmo-Chr4:3484679 8.21E-137 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74242 PF00069 Pkinase 5.40E-44 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00702 - K04371 csv:101213897 471.855