Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00703 ATGGCTGTTTCTCGTCCATCCTTGGATTATTGGCCAATATTGCCGGAGATTTTCATCAGAGCGTCAACAAAGTCCATCAAAATCCCAACCCCACATCTCCAATTCACAAATCTACAAAACCCATCAAATTCTAGATACCCAATTCTCCGATGCTCCCTCGATTCTTCGAAAACCCCCTCCGGGCCGCCGCCGTTGGTTGTGGTCGGCTCGGCCAATGCCGATATCTATGTGGAGATCGACCGGTTGCCGGAGGAGGGCGAGACGATATCTGCCAGAAATGGGCAGACTCTGGCGGGTGGCAAGGGGGCCAATCAGGCCTGCTGTGGTGGCAAGCTCGAGTACCCGACTTACTTTTTGGGTCAGGTCGGTGAGGATGCTCATGGGAAGTTGATCACGGCGGCGCTTGAGGAAGGCGGCGTCCGACTTGATCATTTGACTACTGTTGCCGCGGCGCCAACGGGACACGCGGTGGTGATGCTTCAATCTGGTGGGCAGAATTCTATCATCATTGTTGGTGGTGCTAATATGAATTGTTGGCCTGTGGCGTTGTCTGATAGTGATTTGGAGATTATAAGAACGGCTGGAATTGTTCTTCTCCAGAGGGAGATTCCTGATTCAGTCAACATCCAAGTTGCAAAGGCTGCCAGGAATGCTGGGGTCCCAGTAATTTTAGATGCTGGAGGAGTTGACGCTCCTATCCCACAGGACCTGCTTGACCATGTCGATATTTTCAGTCCAAATGAAAGCGAGCTGAGTCGTTTAACGGGATGCCCAACCGAAAGTTTTGAACAGATCGGACAAGCTGTAGAGAAGTGCTATAAAATGGGTATCAAGCAAGTTCTCGTGAAACTTGGGGCCAAAGGGTCTGCTTTGTTTACACAAGGGGAAGAACCAATCAGACAGCCCATTATATCTGCTGCTAAAGTAATTGATACCACCGGCGCTGGCGACACCTTTACTGCATCATTTGCCGTGGCGCTGGTGGAAGGAAAGTCGAAGAAGGAAAGCCTGAAATTTGCGGCTGCTGCAGCCTCACTTTGTGTTCAAGTGAAGGGAGCCATTCCCAGCATGCCTGACAGGGAATCAGTGCTGAATCTCCTCCATTCAAGGGACTAG 1116 50.81 MAVSRPSLDYWPILPEIFIRASTKSIKIPTPHLQFTNLQNPSNSRYPILRCSLDSSKTPSGPPPLVVVGSANADIYVEIDRLPEEGETISARNGQTLAGGKGANQACCGGKLEYPTYFLGQVGEDAHGKLITAALEEGGVRLDHLTTVAAAPTGHAVVMLQSGGQNSIIIVGGANMNCWPVALSDSDLEIIRTAGIVLLQREIPDSVNIQVAKAARNAGVPVILDAGGVDAPIPQDLLDHVDIFSPNESELSRLTGCPTESFEQIGQAVEKCYKMGIKQVLVKLGAKGSALFTQGEEPIRQPIISAAKVIDTTGAGDTFTASFAVALVEGKSKKESLKFAAAAASLCVQVKGAIPSMPDRESVLNLLHSRD 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3490037 3493208 - CmoCh04G007030.1 Cmo04g00703 379678

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00703 371 SUPERFAMILY Ribokinase-like 64 367 IPR029056 -
Cmo04g00703 371 Gene3D - 62 369 IPR029056 -
Cmo04g00703 371 CDD ribokinase 64 359 IPR011877 GO:0004747|GO:0006014
Cmo04g00703 371 Pfam pfkB family carbohydrate kinase 65 359 IPR011611 -
Cmo04g00703 371 PANTHER SUGAR KINASE 62 369 - -
Cmo04g00703 371 Hamap Ribokinase [rbsK]. 63 365 IPR011877 GO:0004747|GO:0006014
Cmo04g00703 371 PRINTS Ribokinase signature 67 88 IPR002139 GO:0016301
Cmo04g00703 371 PRINTS Ribokinase signature 94 113 IPR002139 GO:0016301
Cmo04g00703 371 PRINTS Ribokinase signature 166 179 IPR002139 GO:0016301
Cmo04g00703 371 PRINTS Ribokinase signature 236 251 IPR002139 GO:0016301
Cmo04g00703 371 PRINTS Ribokinase signature 280 291 IPR002139 GO:0016301
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00703 K00852 rbsK, RBKS; ribokinase [EC:2.7.1.15] - csv:101213654 608.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00703 Cmo-Chr4:3490037 Cmo15g01461 Cmo-Chr15:9921297 9.82E-15 dispersed
Cmo04g00703 Cmo-Chr4:3490037 Cmo17g00583 Cmo-Chr17:6100653 1.44E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g16 . . . . Bpe09g00272 . . Bma13g00918 . Cmo04g00703 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00718 . . . . . . . . . . . . . . . . . . . . . . Cla07g00986 Cam07g1059 Cec07g1130 Cco07g1107 Clacu07g1031 Cmu07g1024 Cre07g1401 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009964 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00703 Cmo_Chr04 FPKM 8.73209 10.863744 8.404 9.150813 11.271189 10.76019 13.193288 14.84697 14.000377 12.920106