Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00704 ATGAGGTCGAGCGCAGGGGATTGCAGTATTAATTCACCGGTGGGGAACGCGGATGGAGCTGCGCAGAAAAGTTGCTTTGACATGGCTACACATTCTCCTAAGAACATCCTCATTACTGGGGCTGCTGGATTTATTGCATCCCATGTTGCTAACAGGCTTGTCAGAAACTATCCTGGCTACAAAATTGTTGTACTTGACAAACTTGATTACTGCTCAAATCTGAAGAATCTTCTTCCTTCTAAGCCATCTCCCAATTTCAAATTTGTTAAGGGGGACATTGGCAGTGCTGATCTTGTCAATTATCTCCTGATTACTGAGTCCATTGATACGATTATGCATTTTGCTGCTCAGACTCATGTTGACAACTCGTTCGGTAATAGTTTCGAGTTCACGAAGAATAATATCTATGGCACACATGTTCTTTTAGAAGCATGCAAGGTCACTGGTCAGATCCAGAGGTTCATCCATGTTAGTACAGATGAAGTATATGGAGAGACAGATGAGGATGCTGTTGTGGGAAACCATGAGGCTTCCCAACTCCTCCCAACAAATCCATACTCTGCAACAAAAGCTGGAGCTGAAATGCTTGTGATGGCCTATGGTAGGTCGTATGGGTTACCTGTGATCACGACACGAGGAAACAATGTCTATGGACCTAATCAGTTTCCTGAGAAGTTAATTCCAAAGTTCATTCTTTTGGCCATGAGAGGTCAGCCTCTTCCAATTCATGGGGATGGTTCTAACGTTAGGAGTTATCTCTACTGTGAGGATGTTGCTGAGGCTTTTGAAGTCATTCTTCACAAAGGAGAGGTTGGGCATGTTTACAACATTGGGACAAAGAAGGAGAGAAGGGTTATAGATGTTGCCGAGGATATATGTAGACTTTTCTCAAGGGACGCAAAGGCAAGCATCAAGTATGTAGACAATAGACCATTTAATGATCAGAGGTATTTCTTGGACGATGAAAAACTCAAGAACTTGGGGTGGTCGGAGCGTACAACGTGGGAAGACGGGCTGAAGAAGACAATTGAATGGTACACCAAGAACCCTGATTGGTGGGGTGATGTCTCTGGGGCTCTGCTGCCACATCCTAGAATGCTAATGATGCCTGGTGGTGTTGAGAGGCACTTTGAAGGTTCTGAAGAGGGAAAACCAGCTTCTTATGCTTCCTGTAATACTAAAATGGTAGTCCCAACTTCCAGGAATCCGGGCTCTCCTTACCAGCCATCCTTGAAATTTTTGCTCTATGGTAGGACAGGGTGGATTGGAGGCCTTCTTGGGCAGCTATGTGATAAACAAGGCATTGCCTATGCTTATGGCAAAGGGCGTTTGGAGGATCGGGCCTCGCTTTTGGCGGATATTCAGAATATTAAACCAACCCATGTTTTCAATGCTGCTGGAGTAACAGGCAGACCCAATGTTGACTGGTGTGAATCTCACAAAACAGAAACAATTCGTGCCAATGTTGCTGGAACCTTAACTTTAGCAGATGTTTGCCGGGAGCACGGACTCTTGATGATCAACTTTGCGACCGGCTGTATATTCGAGTACGATGCCAAACATCCAGAGGGTTCTGGCATTGGATTTAAAGAGGAAGACAAGCCAAATTTCATTGGTTCCTTTTATTCGAAAACCAAGGCCATGGTGGAGGAGCTTCTGAACGAATACGATAACGTCTGCACACTCCGAGTTCGAATGCCGATATCATCTGACTTGAACAACCCACGCAACTTCATTACCAAGATTTCTCGCTACAATAAGGTGGTTAACATCCCAAACAGCATGACCATCCTGGATGAACTTCTGCCCATTTCAATCGAGATGGCGAAGCGTAACTTGAAGGGCATCTGGAACTTCACAAACCCAGGTGTTGTGAGTCACAACGAGATTCTCGAGATGTACAAGAAATACATGGACCCTGAATTCAAGTGGGCTAACTTCACACTGGAAGAACAGGCTAAGGTAATTGTGGCACCCAGAAGCAACAATGAGATGGACAGTTCAAAGCTGAAAAAGGAGTTCCCAGAGTTGCTGGGGATCAAGGAGTCGTTGATCAAGATGCCAGAGAAGTGTTGTCTCTGCATCGTGCAGAAGCAAGCTTCGAATCCTATGAATAAATGA 2121 44.93 MRSSAGDCSINSPVGNADGAAQKSCFDMATHSPKNILITGAAGFIASHVANRLVRNYPGYKIVVLDKLDYCSNLKNLLPSKPSPNFKFVKGDIGSADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIQRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMRGQPLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVAEDICRLFSRDAKASIKYVDNRPFNDQRYFLDDEKLKNLGWSERTTWEDGLKKTIEWYTKNPDWWGDVSGALLPHPRMLMMPGGVERHFEGSEEGKPASYASCNTKMVVPTSRNPGSPYQPSLKFLLYGRTGWIGGLLGQLCDKQGIAYAYGKGRLEDRASLLADIQNIKPTHVFNAAGVTGRPNVDWCESHKTETIRANVAGTLTLADVCREHGLLMINFATGCIFEYDAKHPEGSGIGFKEEDKPNFIGSFYSKTKAMVEELLNEYDNVCTLRVRMPISSDLNNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLKGIWNFTNPGVVSHNEILEMYKKYMDPEFKWANFTLEEQAKVIVAPRSNNEMDSSKLKKEFPELLGIKESLIKMPEKCCLCIVQKQASNPMNK 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3493830 3498109 + CmoCh04G007040.1 Cmo04g00704 379679

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00704 706 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 30 687 - -
Cmo04g00704 706 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 28 359 IPR036291 -
Cmo04g00704 706 Gene3D - 36 340 - -
Cmo04g00704 706 Pfam RmlD substrate binding domain 412 582 IPR029903 -
Cmo04g00704 706 Pfam GDP-mannose 4,6 dehydratase 37 342 IPR016040 -
Cmo04g00704 706 Gene3D - 407 692 - -
Cmo04g00704 706 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 411 674 IPR036291 -
Cmo04g00704 706 CDD dTDP_GD_SDR_e 34 351 IPR005888 GO:0008460|GO:0009225
Cmo04g00704 706 CDD dTDP_HR_like_SDR_e 412 684 - -
Cmo04g00704 706 PANTHER BNAC05G13120D PROTEIN 30 687 - -
Cmo04g00704 706 Gene3D - 227 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00704 K12450 RHM; UDP-glucose 4,6-dehydratase [EC:4.2.1.76] - csv:101208780 1311.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00704 Cmo-Chr4:3493830 Cmo05g00648 Cmo-Chr5:3271742 0 dispersed
Cmo16g00460 Cmo-Chr16:2210073 Cmo04g00704 Cmo-Chr4:3493830 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g26 . . . . Bpe09g00271 Bpe08g00995 Bma10g00464 Bma13g00919 . Cmo04g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00719 . Bda12g00810 . . Bma07g01155 . . . . Cma04g00655 . . . . Cpe01g00592 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000921 5 5 3 5 5 2 3 2 2 2 2 2 3 2 2 3 2 5 3 2 2 3 2 1 3 2 3 8 2 0 86
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00704 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.052219 0.0 0.0 0.0