Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00706 ATGAAATGCAATGCTTGCTGGAGAGAACTTGAAGGGCGAGCTATCTCCACAACTTGCGGACACTTGTTGTGCACAGAGGATGCAAGCAAGATCCTTAGCAATGATGGAGCCTGCCCCATTTGTGATCAAGTTCTTTCTAAAAGCCTCATGAAACCCGTGGACATCAATCCAAATGATGAATGGGTAAATATGGCCATGGCTGGTATAAATCCTCAGATATTGATGAAAAGTGCATATAGAAGTGTAATGTTCTATATTGGACAAAAGGAATTGGAGATGCAGTACAAAATGAACAGAATCGTGGCTCAATGCCGACAGAAATGTGAAGTTATGCAAGAAAAGTTTACTGAAAAATTGGAGCAGGTGCATACTGCATACCAAAAAATGGCCAAGAGATGCCAGATGATGGAACGAGAGATGGAGAATATATCCAAAGACAAACAAGAGCTCCAGGAGAAGTTTGCTGAAAAATCCAGGCAGAAGAGGAAACTAGATGAGATGTATGATCAATTGAGGAATGAGCATGAATCACTAAAACGGTCGGCCATCCAGCCTGTGAGCAATTTTTATCCAAGAAACGAGCCCGATTTGTTCTCAAACCCCGTTAGTTTGATGGATAACAGAGAACCCATGAGGAAAGACTTGCTGGTTTCCGCTCCTGAAACCCCAGGACCAAGAGAGGAAATATGGCCAACACGACAAAATAGCGGGAACTCTGGTCACTTCGACATCTCCGTTGGGTCACCGGCAAAACAAGCTGCTCCGATGGCAATGGAAGCTGGGAATAGAAGAGGTGGAGCTCACAATGCGTTTGGAAGTGGAGCTGGCAACCCCTCCATGACTCTGCGCAACTTGATTCTGTCCCCAATCAAACGACCTCAGCTCTCACGTCGCCCTCAAATGTTCACGTAA 912 45.07 MKCNACWRELEGRAISTTCGHLLCTEDASKILSNDGACPICDQVLSKSLMKPVDINPNDEWVNMAMAGINPQILMKSAYRSVMFYIGQKELEMQYKMNRIVAQCRQKCEVMQEKFTEKLEQVHTAYQKMAKRCQMMEREMENISKDKQELQEKFAEKSRQKRKLDEMYDQLRNEHESLKRSAIQPVSNFYPRNEPDLFSNPVSLMDNREPMRKDLLVSAPETPGPREEIWPTRQNSGNSGHFDISVGSPAKQAAPMAMEAGNRRGGAHNAFGSGAGNPSMTLRNLILSPIKRPQLSRRPQMFT 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3503585 3507374 - CmoCh04G007060.1 Cmo04g00706 379681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00706 303 Pfam zinc-RING finger domain 2 43 IPR001841 -
Cmo04g00706 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 53 IPR013083 -
Cmo04g00706 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CCNB1IP1 HOMOLOG 1 303 - -
Cmo04g00706 303 SUPERFAMILY RING/U-box 2 50 - -
Cmo04g00706 303 Coils Coil 126 181 - -
Cmo04g00706 303 MobiDBLite consensus disorder prediction 219 239 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00706 K10639 CCNB1IP1, HEI10; E3 ubiquitin-protein ligase CCNP1IP1 [EC:2.3.2.27] - csv:101209267 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00459 Cmo-Chr16:2203176 Cmo04g00706 Cmo-Chr4:3503585 2.81E-99 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g31 . . . . . . Bma10g00462 . . Cmo04g00706 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1022 . . . . . . . . . . . . . . . . Cma04g00657 . . . . Cpe01g00594 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003426 1 5 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 9 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00706 Cmo_Chr04 FPKM 15.781122 16.013107 13.08765 11.830291 39.624985 32.75795 43.741329 3.405368 5.126948 4.70895