Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00707 ATGAAGATTCAGTGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCCGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATGCTTACGTAACGGGTCATCAACGCTTTCTGCTCACTGGTGTGAAAGTCGCACTCGAGCCAACCGACCCTGTTCCTTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACGAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGTGGATCTGATGACTTCATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGACTCCGACTCATCACCAAGTTTAAGAGCTGCTGATGTTGAACTCGACGATGACGATGAATGCCCGGGTCACATTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATAGTGCTGTTTTTGTTCCTGACATCTGCGCTTCAGAAAGGTCACGCAACGGTATGTTCTCGAAGGAGGCAGTTTTAGATGTCTGA 879 47.55 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTANAYVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDFMTNRTLLTGDSASGGFSQWQIDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPSLRAADVELDDDDECPGHIPEASWTVPQVPSPPTASGLYWPRSYHNSMDSAVFVPDICASERSRNGMFSKEAVLDV 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3508231 3511214 + CmoCh04G007070.1 Cmo04g00707 379682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00707 292 Gene3D Classic Zinc Finger 1 92 - -
Cmo04g00707 292 MobiDBLite consensus disorder prediction 141 155 - -
Cmo04g00707 292 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 277 - -
Cmo04g00707 292 CDD Bbox1_BBX-like 57 99 - -
Cmo04g00707 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Cmo04g00707 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo04g00707 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmo04g00707 292 MobiDBLite consensus disorder prediction 117 155 - -
Cmo04g00707 292 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmo04g00707 292 CDD Bbox1_BBX-like 5 47 - -
Cmo04g00707 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmo04g00707 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00707 Cmo16g00458 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00707 Cmo-Chr4:3508231 Cmo08g00198 Cmo-Chr8:1172012 6.89E-45 dispersed
Cmo16g00458 Cmo-Chr16:2198493 Cmo04g00707 Cmo-Chr4:3508231 0 wgd
Cmo16g00458 Cmo-Chr16:2198493 Cmo04g00707 Cmo-Chr4:3508231 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9551 PF00643 zf-B_box 4.30E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00707 - - csv:101209756 525.398