Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00707 ATGAAGATTCAGTGCAATGTCTGCGAAATGGCTGAAGCCACCGTTCTGTGTTGTGCTGATGAGGCGGCGCTGTGCTGGGCCTGCGATGAGAACATTCATGCCGCCAACAAGCTCGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGTTCTTCGTCTCAGATGCCCAGATGCGACATCTGCCAGGAAGCTAGTGGCTACATCTTCTGTTTAGAGGATCGAGCATTACTTTGCAGAAAGTGTGATGTTGCAATACACACAGCAAATGCTTACGTAACGGGTCATCAACGCTTTCTGCTCACTGGTGTGAAAGTCGCACTCGAGCCAACCGACCCTGTTCCTTGTTCTTCCATAGCTAATTCACATTCTAGAGAGATATCAACCAAGACGAAAGTTAGACCACCGTCTGATAAGGAATTCTCGATGCCTTCGTCTGGTGAACTCAGCAGAAGCCTGTCTGTTCAAGGTGGATCTGATGACTTCATGACAAATAGAACATTGCTTACTGGAGATTCTGCTTCTGGTGGCTTTTCACAATGGCAAATAGATGAACTCATTAATCTGACTGGATTCAATCAGAATTATGGGTTTATGGATAACGGATCATCCAAGGCTGATAGTGGAAAGCTTGGGGACTCCGACTCATCACCAAGTTTAAGAGCTGCTGATGTTGAACTCGACGATGACGATGAATGCCCGGGTCACATTCCAGAGGCTTCCTGGACTGTGCCTCAGGTTCCCTCCCCTCCCACAGCATCTGGCTTATACTGGCCAAGAAGTTACCATAATTCTATGGATAGTGCTGTTTTTGTTCCTGACATCTGCGCTTCAGAAAGGTCACGCAACGGTATGTTCTCGAAGGAGGCAGTTTTAGATGTCTGA 879 47.55 MKIQCNVCEMAEATVLCCADEAALCWACDENIHAANKLASKHQRVPLSGSSSQMPRCDICQEASGYIFCLEDRALLCRKCDVAIHTANAYVTGHQRFLLTGVKVALEPTDPVPCSSIANSHSREISTKTKVRPPSDKEFSMPSSGELSRSLSVQGGSDDFMTNRTLLTGDSASGGFSQWQIDELINLTGFNQNYGFMDNGSSKADSGKLGDSDSSPSLRAADVELDDDDECPGHIPEASWTVPQVPSPPTASGLYWPRSYHNSMDSAVFVPDICASERSRNGMFSKEAVLDV 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3508231 3511214 + CmoCh04G007070.1 Cmo04g00707 379682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00707 292 Gene3D Classic Zinc Finger 1 92 - -
Cmo04g00707 292 MobiDBLite consensus disorder prediction 141 155 - -
Cmo04g00707 292 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 277 - -
Cmo04g00707 292 CDD Bbox1_BBX-like 57 99 - -
Cmo04g00707 292 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 277 - -
Cmo04g00707 292 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cmo04g00707 292 SMART bboxneu5 52 99 IPR000315 GO:0008270
Cmo04g00707 292 MobiDBLite consensus disorder prediction 117 155 - -
Cmo04g00707 292 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Cmo04g00707 292 CDD Bbox1_BBX-like 5 47 - -
Cmo04g00707 292 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Cmo04g00707 292 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00707 - - - csv:101209756 525.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00707 Cmo16g00458 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00707 Cmo-Chr4:3508231 Cmo08g00198 Cmo-Chr8:1172012 6.89E-45 dispersed
Cmo16g00458 Cmo-Chr16:2198493 Cmo04g00707 Cmo-Chr4:3508231 0 wgd
Cmo16g00458 Cmo-Chr16:2198493 Cmo04g00707 Cmo-Chr4:3508231 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g32 . . . . Bpe09g00270 . Bma10g00461 Bma13g00920 Cmo16g00458 Cmo04g00707 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1023 . . . . . . Blo10g00720 . . . . . . . . . Cma04g00659 Cma16g00426 . . Cpe14g00359 Cpe01g00595 . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo12g00329 CST 6 323 C2C2-CO-like Transcription Factor Family AT5G15850 51.1 2.6e-42 170.2
Cmo12g00329 CST 4 332 C2C2-CO-like Transcription Factor Family AT3G02380 50.7 1.4e-40 164.5
Cmo05g00340 CST 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 61.1 4.1e-83 305.8
Cmo12g00329 CST 1 329 C2C2-CO-like Transcription Factor Family AT5G24930 59.4 2.4e-75 280.0
Cmo11g00414 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.8 1.9e-56 217.2
Cmo10g00449 CCT,CST 20 374 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 9.5e-56 214.9
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 56.0 2.0e-93 340.1
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT3G07650 55.4 5.1e-89 325.5
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.2e-87 318.2
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.2 4.1e-86 315.8
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo20g00696 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 7.5e-88 321.6
Cmo02g00244 CCT,CST 47 461 C2C2-CO-like Transcription Factor Family AT5G48250 55.5 2.2e-87 320.1
Cmo19g00853 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.1 1.7e-84 310.5
Cmo11g01818 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 6.5e-84 308.5
Cmo11g01107 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 57.6 1.2e-52 204.5
Cmo01g02006 CCT,ECH 1 196 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 2.9e-51 199.9
Cmo20g00825 . 1 214 C2C2-CO-like Transcription Factor Family AT1G75540 51.2 1.8e-45 180.6
Cmo04g00707 CST 1 276 C2C2-CO-like Transcription Factor Family AT1G78600 50.2 1.8e-74 276.9
Cmo04g00794 CCT,ECH 1 185 C2C2-CO-like Transcription Factor Family AT2G21320 62.2 3.8e-55 211.8
Cmo07g00440 CCT,CST,ECH 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 7.0e-49 191.0
Cmo03g00728 CCT,CST,ECH 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT2G21320 81.4 5.0e-39 158.3
Cmo04g00794 CCT,ECH 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 62.4 2.8e-56 215.7
Cmo07g00440 CCT,CST,ECH 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 68.2 4.2e-52 201.8
Cmo03g00728 CCT,CST,ECH 1 168 C2C2-CO-like Transcription Factor Family AT4G38960 60.1 2.8e-48 189.1
Cmo16g00660 . 1 97 C2C2-CO-like Transcription Factor Family AT4G38960 81.4 2.2e-40 162.9
Cmo11g01107 . 1 233 C2C2-CO-like Transcription Factor Family AT4G39070 53.8 4.6e-54 208.8
Cmo12g00380 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9551 PF00643 zf-B_box 4.30E-07 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00707 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.167822 0.080208 0.0