Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00710 ATGGCTTTAAGGAGTAGGATCTTGGAGCAAGGAATTCTTCTTCTTCTTCTTTTTTTGGTTTCTGGAGGTTCGACGGCGGCGAGTACGGCGGAGGAGTGCAATTTATTCGTCGGAAGTTGGGTTGTTGACGAGACTTACCCGCTGTACACGGCGGCGAGTTGTCCTTTCGTGCAGCACGAGTTCAGCTGCGTCAAAAATGGCCGCCCCGATTTAGGTTACACCAAGTACAGATGGCAGCCTCTCAATTGCGATTTATCCAGGTTTGATGGAAAACTTTTCTTAGAAAAACTTAGGGGCAAAAGTATACTATTTGTGGGAGACTCACTTAGTCGGAATCAATGGCAATCTTTGACATGCATGCTTCACTCCGCTGTTCCAAATGCACATTATACTTTGACAAGGGTCGGAGATGTTTCCACATTCACTTTTACGGAGTACGAAGTGAAAGTGATGCTCGAGAAAAATGTATATCTAGTAGACATTGTAAGAGAAGAGATTGGAAGAGTGTTGAAATTAGATATCATTAATGAAGGATCGAGTAAGTTGTGGCAAAGCGTCGACTTTCTCATTTTTAATACTTGGCACTGGTGGAACCGCAGAGGATCTTCTCAACCTTGGGATTATATTGAAATAGGGAAAGAGATGTTGAGAGATATGGATAGAATGGTAGCTTTTGAGAAGGCTCTCACAACTTGGGGAAGATGGGTTGATCTCAACATTGATCCTCAAACAAATAATGTCTTTTTCCAAGGAATTTCTCCATCCCATTACAATGGAAGTCTATGGGGAGAGCCAAGAGCAAAGAGCTGCGTAGGTCAAAACGAACCGGTGGCAGGCTCGGTGTACCCGGGCGGTTCACCGCCGGCGGTGGCGGTGCTGAAGGCTGTGCTAAGCAAAATCATAAACCCTATTCACCTTCTAGACGTAACAGAGTTATCACTGCTGAGAAAAGATGGGCACCCTTCTAAGTATGGCTTAGTTGGCAGAACTGGATTGGATTGTAGCCATTGGTGCCTCGCGGGCGTTCCTGATACTTGGAATCTCTTATTTTACAATCTCATTATTTAA 1068 44.57 MALRSRILEQGILLLLLFLVSGGSTAASTAEECNLFVGSWVVDETYPLYTAASCPFVQHEFSCVKNGRPDLGYTKYRWQPLNCDLSRFDGKLFLEKLRGKSILFVGDSLSRNQWQSLTCMLHSAVPNAHYTLTRVGDVSTFTFTEYEVKVMLEKNVYLVDIVREEIGRVLKLDIINEGSSKLWQSVDFLIFNTWHWWNRRGSSQPWDYIEIGKEMLRDMDRMVAFEKALTTWGRWVDLNIDPQTNNVFFQGISPSHYNGSLWGEPRAKSCVGQNEPVAGSVYPGGSPPAVAVLKAVLSKIINPIHLLDVTELSLLRKDGHPSKYGLVGRTGLDCSHWCLAGVPDTWNLLFYNLII 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3516087 3518092 - CmoCh04G007100.1 Cmo04g00710 379685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00710 355 Pfam PMR5 N terminal Domain 31 84 IPR025846 -
Cmo04g00710 355 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 85 352 IPR026057 GO:0016740
Cmo04g00710 355 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 12 354 IPR029962 GO:0016413
Cmo04g00710 355 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 41 12 354 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00710 - - - csv:101208056 624.394
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00710 Cmo-Chr4:3516087 Cmo15g00855 Cmo-Chr15:4337504 5.65E-137 dispersed
Cmo04g00710 Cmo-Chr4:3516087 Cmo18g00385 Cmo-Chr18:2489154 7.08E-137 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g38 . . . . . . . . . Cmo04g00710 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00662 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013547 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 2 1 2 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00710 Cmo_Chr04 FPKM 10.16358 11.310304 14.495985 14.968977 11.378228 13.401944 15.222516 19.094984 16.343184 14.646894