Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00717 ATGGCTGGTTACAGAGCTGATGATGATTACGACTACCTATTCAAGGTGGTTCTGATTGGGGACTCCGGTGTCGGCAAGTCCAATTTGCTCTCCAGATTCACTAAGAACGAGTTCAACCTCGAGTCTAAATCCACCATTGGTGTCGAATTCGCCACCAGGACCTTGAACGTCGATGGTAAAGTTATCAAAGCTCAGATTTGGGATACTGCTGGCCAAGAAAGGTTTTCTTTCCTTCTTCTCTTCTCTGGATTTCTCGCCTTCTCTTGCCTTCTCTTGCCTTCTCCTTGGTTTTGCTTCCTGTTCATTTTCGTGTACCGTGCCATCACCAGCGCATACTATCGTGGAGCAGTTGGTGCACTCCTTGTATACGATGTTACTCGTCATGCAACATTTGAGAACGTGGACCGGTGGCTAAAAGAATTGAAGAACCACACAGATTCCAACATTGTTGTGATGCTTGTTGGAAACAAATCTGATCTTCGCCACCTTGTGGCTGTTCCAACCGAGGATGGAAAGTCGTACGCTGAGAGGGAATCACTGTACTTCATAGAAACCTCTGCACTGGAAGCAGTCAACGTCGAAAAAGCATTCGCCGAGGTCCTGACTCAGATCTATCACATAGTAAGCAAGAAGGCTGTTGAAGGTGGAGAAAACGGATCTGCTTCCTCTGTCCCTGCCCAGGGGGAGAAAATAAACATCAGAGACGAATCGGGTTTAAACAGAATCAAATGTTGCTCGAGCTAA 744 46.64 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLNVDGKVIKAQIWDTAGQERFSFLLLFSGFLAFSCLLLPSPWFCFLFIFVYRAITSAYYRGAVGALLVYDVTRHATFENVDRWLKELKNHTDSNIVVMLVGNKSDLRHLVAVPTEDGKSYAERESLYFIETSALEAVNVEKAFAEVLTQIYHIVSKKAVEGGENGSASSVPAQGEKINIRDESGLNRIKCCSS 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3562533 3565212 + CmoCh04G007170.1 Cmo04g00717 379692

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00717 247 ProSiteProfiles small GTPase Rab1 family profile. 9 245 - -
Cmo04g00717 247 SMART rho_sub_3 16 203 IPR001806 GO:0003924|GO:0005525
Cmo04g00717 247 SMART ran_sub_2 19 242 - -
Cmo04g00717 247 PANTHER RAS-RELATED PROTEIN RABA1B 105 247 - -
Cmo04g00717 247 SMART rab_sub_5 14 207 - -
Cmo04g00717 247 PANTHER RAS-RELATED PROTEIN RABA1B 1 76 - -
Cmo04g00717 247 SMART ras_sub_4 11 207 - -
Cmo04g00717 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 210 IPR027417 -
Cmo04g00717 247 CDD Rab11_like 11 205 - -
Cmo04g00717 247 PANTHER DRAB5-RELATED 105 247 - -
Cmo04g00717 247 PRINTS Transforming protein P21 ras signature 37 53 - -
Cmo04g00717 247 PRINTS Transforming protein P21 ras signature 182 204 - -
Cmo04g00717 247 PRINTS Transforming protein P21 ras signature 14 35 - -
Cmo04g00717 247 PRINTS Transforming protein P21 ras signature 55 77 - -
Cmo04g00717 247 PANTHER DRAB5-RELATED 1 76 - -
Cmo04g00717 247 TIGRFAM small_GTP: small GTP-binding protein domain 105 200 IPR005225 GO:0005525
Cmo04g00717 247 TIGRFAM small_GTP: small GTP-binding protein domain 12 77 IPR005225 GO:0005525
Cmo04g00717 247 Pfam Ras family 15 78 IPR001806 GO:0003924|GO:0005525
Cmo04g00717 247 Pfam Ras family 105 205 IPR001806 GO:0003924|GO:0005525
Cmo04g00717 247 ProSiteProfiles small GTPase Ras family profile. 2 247 IPR001806 GO:0003924|GO:0005525
Cmo04g00717 247 ProSiteProfiles small GTPase Rho family profile. 7 205 - -
Cmo04g00717 247 Gene3D - 6 245 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00717 K07904 RAB11A; Ras-related protein Rab-11A - csv:101210988 410.994
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00717 Cmo09g00827 CCT
Cmo04g00717 Cmo09g00827 ECH
Cmo04g00717 Cmo16g00469 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00717 Cmo-Chr4:3562533 Cmo18g00409 Cmo-Chr18:2671836 1.11E-128 dispersed
Cmo16g00469 Cmo-Chr16:2239375 Cmo04g00717 Cmo-Chr4:3562533 4.19E-147 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g98 Blo03g00702 Blo03g01562 . Bda09g00544 . Bpe08g00992 . . Cmo16g00469 Cmo04g00717 . . . Car09g00748 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00443 . . Bma14g00271 . . Cmo09g00827 Cma04g00671 Cma16g00434 . . Cpe14g00367 Cpe01g00605 . . . . . . . . . . . . . . . Csa04g00810 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000143 10 6 8 7 9 5 11 6 5 6 6 5 10 6 6 12 5 7 12 6 6 7 5 6 6 7 4 11 6 3 209
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00717 Cmo_Chr04 FPKM 6.3472 8.014985 2.319654 2.577442 20.617641 21.563208 20.55821 0.114253 0.0 0.102014