Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00718 ATGAGGGAGGAAGAAATCGAGAAGCTCCGAGGTGTAGTAAGGGACTGTGTGAGCAAGCATCTCTACTCCTCCGCCATCTTCTTCGCCGACAAAGTCGCCGCTTTCACTGAGGACCCTGCGGATATTTACATGCAGGCGCAGGCCCTCTTTCTTGGACGCCATTTTCGCCGTGCGTTTCACCTCCTCAATGCCTCCAAGATCGTCCTCCGTGACCCTCGGTTTCGCTACCTCGCTGCCAAGTGCCTTGAGGAATTGAAGGAGTGGGACCAATGCCTAGCGATGCTTGGTGATGCCAAAGTGAACGAGCATGGTTACGTGCTTGATAACAAGGATCACAGTGGCATGTACCTTGACAAAGATTGTGAGGATCGTGAGATTAATATAGCCGCAGCAACATGCTTTTTAAGAGGCAAGGCATATGAAGCTCTGGAAAACCGCACGCAGGCTCGACTTTGGTACAAAGCTGCTATCAAAGCTGACCCTCTATGCTATGAGGCTTTGGAGTGTCTCATAGAAAGTCACATGCTGACATGTGATGAAGAATCAAGTCTACTCTCATCATTGCAGTTTGGTCCTGAAGATGGATGGCTCTCATCATTTTATGCATGCTTAATAAAGAAATACGATAAAGAAAATATCATTGAAGCGAGATTCAAAGAACTTGAAAGAGAAAGTTGTAATTCAAAAAGTTCTGATCCATCATTTATTCGAACTCTAGAAACTAACACTGATCTGTTAGCTTGCAAAGCTGAATACTACCATCAGTGTGGTGAATATCAGAAATGCTTTGAACTTACCTCTGTTTTGCTTGAAAAAGATCCCTTCCATTTAAAAAGTACACTGGTACATTTAGCTGCAGCAATGGAGCTTGGACATTCAAATGAACTTTATCTAATGGCATGCAACCTGGTCAAGGACTATCCTCAAAAGGCGTTGTCGTGGTTTGCTGTCGGTTGCTATTACTACTGTATCAAAAAATATGATCAATCACGTCGTTTTTTCAGCAAAGCTACAACTCTGGACGGAACATTTGCACCTGCTTGGATAGGGTATGGTAACGCTTATGCTGCTCAAGAAGAGGGTGACCAAGCCATGTCTGCTTATCGCACTGGTGCTCGATTGTTTCCAGGGTGTCATTTACCAACATTATACATTGGGATGGAATATATGCGAACCCACAGCTTTAAGCTTGCTGAGCAGTTTTTTGTGCAGGCGAAGACAATTTGTCCATCAGATCCTCTTGTTTACAATGAGCTTGGAGTTGTTGCTTATGACATGAAGGAGTACAATAAGGCTGCATGGTGGTTTGAGAAGACTTTGGCCTGCGTTCCATCTCCTTTGAGTGAAATGTGGGAGCCTACCATAGTTAATCTCGCCCATTCATATCGAAAATTAAAGGTGCACCGTGAAGCAATTGCATACTATGAGAAAGCACTTGCGTTGTCAACAAGAAGTCTTAGCACTTATGCTGGTCTTGCATATACTTATCATTTGCAGGATCATTTTACTGCAGCCATTACATACTACCATAAGGCATTGTGGCTGAAACCAGATGATCAGTTCTGCACAGAAATGTTAAGTATAGCTCTTATGGATGAATGCCAAAATGGGATGGATCCTAAGGCAGACCTTCGGAGGAGTGAGGAATTTGTATCTAGCAAGAGAAAGGTAGAGAGGTCCCTGGATAGAATAGATAGAAATTATTGA 1707 43.53 MREEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTEDPADIYMQAQALFLGRHFRRAFHLLNASKIVLRDPRFRYLAAKCLEELKEWDQCLAMLGDAKVNEHGYVLDNKDHSGMYLDKDCEDREINIAAATCFLRGKAYEALENRTQARLWYKAAIKADPLCYEALECLIESHMLTCDEESSLLSSLQFGPEDGWLSSFYACLIKKYDKENIIEARFKELERESCNSKSSDPSFIRTLETNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTLVHLAAAMELGHSNELYLMACNLVKDYPQKALSWFAVGCYYYCIKKYDQSRRFFSKATTLDGTFAPAWIGYGNAYAAQEEGDQAMSAYRTGARLFPGCHLPTLYIGMEYMRTHSFKLAEQFFVQAKTICPSDPLVYNELGVVAYDMKEYNKAAWWFEKTLACVPSPLSEMWEPTIVNLAHSYRKLKVHREAIAYYEKALALSTRSLSTYAGLAYTYHLQDHFTAAITYYHKALWLKPDDQFCTEMLSIALMDECQNGMDPKADLRRSEEFVSSKRKVERSLDRIDRNY 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3565802 3574637 + CmoCh04G007180.1 Cmo04g00718 379693

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00718 568 ProSiteProfiles TPR repeat profile. 345 378 IPR019734 GO:0005515
Cmo04g00718 568 Pfam Tetratricopeptide repeat 456 482 IPR019734 GO:0005515
Cmo04g00718 568 Pfam Tetratricopeptide repeat 131 161 IPR019734 GO:0005515
Cmo04g00718 568 ProSiteProfiles TPR repeat profile. 413 446 IPR019734 GO:0005515
Cmo04g00718 568 PANTHER CELL DIVISION CYCLE 16,23,27 6 536 - -
Cmo04g00718 568 SMART tpr_5 452 485 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 413 446 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 345 378 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 486 519 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 243 276 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 379 412 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 311 344 IPR019734 GO:0005515
Cmo04g00718 568 SMART tpr_5 130 163 IPR019734 GO:0005515
Cmo04g00718 568 Gene3D Tetratricopeptide repeat domain 5 532 IPR011990 GO:0005515
Cmo04g00718 568 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Cmo04g00718 568 Pfam Tetratricopeptide repeat 488 519 IPR019734 GO:0005515
Cmo04g00718 568 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Cmo04g00718 568 SUPERFAMILY TPR-like 307 523 IPR011990 GO:0005515
Cmo04g00718 568 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 536 - -
Cmo04g00718 568 SUPERFAMILY TPR-like 38 175 IPR011990 GO:0005515
Cmo04g00718 568 ProSiteProfiles TPR repeat profile. 486 519 IPR019734 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00718 K03353 APC6, CDC16; anaphase-promoting complex subunit 6 - csv:101217217 1088.94
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00718 Cmo16g00470 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00718 Cmo-Chr4:3565802 Cmo10g01089 Cmo-Chr10:6003951 1.43E-09 dispersed
Cmo16g00470 Cmo-Chr16:2241977 Cmo04g00718 Cmo-Chr4:3565802 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g99 . . . . . . . Bma13g00927 Cmo16g00470 Cmo04g00718 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo10g00730 . . . . . . . . . Cma04g00672 Cma16g00435 . . Cpe14g00368 Cpe01g00606 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006118 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 2 6 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00718 Cmo_Chr04 FPKM 6.09157 7.60749 0.0 0.0 0.0 0.0 0.0 0.229218 0.130388 0.171518