Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00721 ATGGGTTTTCCTTCTTTCATCTTCTTCTTTCATAATCCGATTCTGGGTCTAATTTCCTTCTCTGTAAATGGCGATTTCCAAGGTTCGGGAAGAGATGGCCTTTACGTTGAGCTATGGAAGGCCTCTGCTGGGCCTCTTGTCGAAGTTCCTCGTGTTCATGAACATGTTTTCTATTTTCCTCAAGGCCACATGGAACAGTTGGAGGCATCTACAAATCAGGAGCTAAATCAGAAACTCCCTTCCTTTAATCTTCCCTCCAAAATTCTCTGTCATGTAGTTGATGTCCGGCTGCTGGCAGAGCAGGAGACCGATGAGGTTTATGCACAGATATCTTTAATTCCAGAAGGAAATCAAGAGGAACCTGCAACTCCTGGTCCTTCGCCCGGGGAATGTCGAAAATCGAAAGTTCATTCGTTTTGCAAGGTTTTAACTGCTTCTGATACTAGCACCCATGGGGGATTCTCCGTGCTCCGTAAACACGCTACCGAATGCCTGCCTCCATTGGATATGACCCAACAGACCCCGACTCAAGAACTCATAGCCAAAGATCTTCACGGTTACGAGTGGCGATTCAAGCATATATTCAGGGGTCAACCACGAAGGCATTTGCTAACGACCGGATGGAGCACCTTTGTTACGTCTAAGAGATTAGTTGCTGGAGACTCATTTGTATTCTTGAGGGGGGAAAATGGGGAATTACGAGTCGGAGTGAGGCGTCTTTCTCGTCAACAAAGCACCATGCCTTCGTCTGTGATTTCGAGTCACAGCATGCACTTAGGAGTGCTTGCTACTGCATCTCATGCTGCTGCAACTCTAACTCGCTTCGTTGTCTATTATAAACCGAGGGCAAGCCAGTTTCTGGTCAGCTTAAGTAAGTATAAAGAAGCCATGAACACTAAGTTCTTAGTTGGGATGAGGTTCAAGATGAGGTTTGAAGGAGAGGACTCTCCTGAGAGAAGGTTTTCGGGCACCATAATCGGCGTTGACGACATATCTCCTTACTGGCCCAATTCGCAATGGCGATCACTGAGAGTTCAATGGGATGAACTTGCATCTATTCAAAGACCAGAGAGGGTTTCGCCATGGGAGATCGAACCGTTTGTGGCTCCCGCGTCCCAGAGCATTCCTCAATCAATTTCGGTAAAGAACAAACGGCCTCGGCCTCCACTTGACATTCCAGATTCTGATAATTCAACCGTGACAACTCTTCGACATCCAGTATCGACTCAATCATATGATGATAAAACACAGCTGAGTGTTCCTGCAGGATGGCATTACAAGCAAACAGATATTAGCAGCAATGGGAATTCGGTGTCGAGGACTCATAACGAGGGTTCTTGGTTAACCGTCCCGAATGGGAGTGTTTCGCAGCATCGATTAAAGGATTCGACAGAGGACCATAAAAGCAATTCTGTTTGGTCAGCAGTCTTCCCTGGAGTGCCAACAGCACACTCGACATGTCCAACTCCACGCACATCGAACCCAATGAGTGACCAAATAAATGAGTTTGGGGAAGAGGGGAGGAAAACCGAGGTGGCTCCTAGCTGTCGCTTGTTTGGGATCGAGCTCATTGATCATTCTAAGAGGCCCGTTCCACCCGAAAGGACTGCTGATCAATCGAACAGCGCAGCAAATGAAGTCACTGAAAGCCATGTCAATACCTTGCTGTCATCTAATGCAGAGCAGCAGGGCTCAAACCTGCCAAAGGCTTCTTCTAAAGAACGAAAATTAGGACTTTTACAAGCACTTCCTAAAGAGATCCAGCACAAGCACAATGCCTCGACCAACTGTCGAAGCCGAACCAAGGTTCAAATGCAGGGGATGGCTGTGGGACGAGCGGTGGACCTTACGACATTGGTAGGGTATGACCAACTCATTGACGAAATGGAAAAGATGTTTGATATCAAGGGAGAACTTCGTCCTCGTGACAAGTGGGAGATTGTATTCACAGACGATGAAGGCGATACGATGCTCATGGGCGATTATCCATGGCAGGAATTCTGTAACATGGTGAGAAGAATATACATATGGTCGAGTCAAGATGTAAAGACGAGTTCGGGCAGAAGACTCACAATGTCTGCGATCGAATTCGATGGAACTGCAATAACCTCGGAATCAGCTGATAGCTGA 2130 47.0 MGFPSFIFFFHNPILGLISFSVNGDFQGSGRDGLYVELWKASAGPLVEVPRVHEHVFYFPQGHMEQLEASTNQELNQKLPSFNLPSKILCHVVDVRLLAEQETDEVYAQISLIPEGNQEEPATPGPSPGECRKSKVHSFCKVLTASDTSTHGGFSVLRKHATECLPPLDMTQQTPTQELIAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFLRGENGELRVGVRRLSRQQSTMPSSVISSHSMHLGVLATASHAAATLTRFVVYYKPRASQFLVSLSKYKEAMNTKFLVGMRFKMRFEGEDSPERRFSGTIIGVDDISPYWPNSQWRSLRVQWDELASIQRPERVSPWEIEPFVAPASQSIPQSISVKNKRPRPPLDIPDSDNSTVTTLRHPVSTQSYDDKTQLSVPAGWHYKQTDISSNGNSVSRTHNEGSWLTVPNGSVSQHRLKDSTEDHKSNSVWSAVFPGVPTAHSTCPTPRTSNPMSDQINEFGEEGRKTEVAPSCRLFGIELIDHSKRPVPPERTADQSNSAANEVTESHVNTLLSSNAEQQGSNLPKASSKERKLGLLQALPKEIQHKHNASTNCRSRTKVQMQGMAVGRAVDLTTLVGYDQLIDEMEKMFDIKGELRPRDKWEIVFTDDEGDTMLMGDYPWQEFCNMVRRIYIWSSQDVKTSSGRRLTMSAIEFDGTAITSESADS 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3582996 3586364 - CmoCh04G007210.1 Cmo04g00721 379696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00721 709 Pfam B3 DNA binding domain 139 239 IPR003340 GO:0003677
Cmo04g00721 709 Gene3D - 300 372 - -
Cmo04g00721 709 Pfam Auxin response factor 265 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cmo04g00721 709 SMART B3_2 139 241 IPR003340 GO:0003677
Cmo04g00721 709 MobiDBLite consensus disorder prediction 527 549 - -
Cmo04g00721 709 PANTHER AUXIN RESPONSE FACTOR 9 29 694 - -
Cmo04g00721 709 Gene3D - 136 240 IPR015300 -
Cmo04g00721 709 ProSiteProfiles PB1 domain profile. 598 679 IPR000270 GO:0005515
Cmo04g00721 709 Gene3D - 593 686 - -
Cmo04g00721 709 CDD B3_DNA 137 239 IPR003340 GO:0003677
Cmo04g00721 709 SUPERFAMILY DNA-binding pseudobarrel domain 130 268 IPR015300 -
Cmo04g00721 709 MobiDBLite consensus disorder prediction 534 549 - -
Cmo04g00721 709 ProSiteProfiles B3 DNA-binding domain profile. 139 241 IPR003340 GO:0003677
Cmo04g00721 709 MobiDBLite consensus disorder prediction 375 401 - -
Cmo04g00721 709 Pfam AUX/IAA family 588 634 IPR033389 -
Cmo04g00721 709 Pfam AUX/IAA family 645 682 IPR033389 -
Cmo04g00721 709 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 29 694 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cmo04g00721 709 SUPERFAMILY CAD & PB1 domains 595 674 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00721 Cmo-Chr4:3582996 Cmo15g01361 Cmo-Chr15:9303666 0 dispersed
Cmo20g00525 Cmo-Chr20:2533242 Cmo04g00721 Cmo-Chr4:3582996 4.83E-83 dispersed
Cmo04g02004 Cmo-Chr4:10648106 Cmo04g00721 Cmo-Chr4:3582996 0 transposed
Cmo06g00004 Cmo-Chr6:11803 Cmo04g00721 Cmo-Chr4:3582996 9.52E-130 transposed
Cmo08g00122 Cmo-Chr8:629552 Cmo04g00721 Cmo-Chr4:3582996 0 transposed
Cmo16g00585 Cmo-Chr16:2822610 Cmo04g00721 Cmo-Chr4:3582996 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9553 PF02362 B3 8.80E-22 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00721 K14486 - csv:101213942 1084.32