Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00786 ATGGATTTGGGTTCGTGTTCTAGATTTCCGCTTGATTCAAGCACAGATTTTGAAAAGGAGCAGCAGCAACAGCAAGAAATGGAATCCAGCTCCCTTTTTGTTGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTAAACCGGTTGGTCATCCCAAAGCAACACGCTGAAAAGTACTTCCCGCTTGATTCTTCATCCAACGACAAGGGTCTTCTCTTGAACTTCGAAGACCGCTGTGGAAAATCGTGGCGGTTCCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTCATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAGCGCCTCGATGCTGGTGATATCGTCTCCTTTCAACGAGGCCTTGGTCATCTTGGTAAAGATCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCCCGCTTGACACACCTATTACTTTTCACCACAACCACCACCTCCACGGCGGTGGAGCCGCCGGCGTTGCCCAAATTCCTCACCATTTTCACCTTCACCAGTGGACTCCAGTTGCCACACCCTTATCTTTACCCAGGGACCACCTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATCTTACCCTATTTCATAATGATAATTTTAATCTCTATAATCATCATTATCATCATCATTATCTTAACCCTCCTCCCATCCAAGACGGCGGTGGTTCGCCATCGGTTTTGTACCATTTAAGATCTGCGCCGCCACCGCCACCCGTGGCGGTGGGCGGTGGTGGCCGTGGAATTGGGAAAGGTGCTGCTTCTTCTAAGACATTGAGACTTTTTGGTGTCAACATGGAATGTGCAGTGTCTGAAGATCAATCTGATGATGAATGTGACATAACAACCTCGACTACGACAATGTCGCCTCAATTCCGCGTTTACGATGGAATGCCGATGTCGATACCGATACGGATGCCGAACAGTAACAACAAGCTGACGACCGACTTTTTCAATAAAGGGAAGTCGTCAAATTGA 1026 47.76 MDLGSCSRFPLDSSTDFEKEQQQQQEMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGLGHLGKDRFFIDWRRRPPHAPLDTPITFHHNHHLHGGGAAGVAQIPHHFHLHQWTPVATPLSLPRDHLLHLPQNNSNHNNLTLFHNDNFNLYNHHYHHHYLNPPPIQDGGGSPSVLYHLRSAPPPPPVAVGGGGRGIGKGAASSKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRVYDGMPMSIPIRMPNSNNKLTTDFFNKGKSSN 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3937439 3938464 - CmoCh04G007860.1 Cmo04g00786 379761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00786 341 MobiDBLite consensus disorder prediction 1 24 - -
Cmo04g00786 341 SMART B3_2 40 145 IPR003340 GO:0003677
Cmo04g00786 341 Gene3D - 33 159 IPR015300 -
Cmo04g00786 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 20 304 - -
Cmo04g00786 341 Pfam B3 DNA binding domain 40 144 IPR003340 GO:0003677
Cmo04g00786 341 SUPERFAMILY DNA-binding pseudobarrel domain 37 142 IPR015300 -
Cmo04g00786 341 CDD B3_DNA 38 127 IPR003340 GO:0003677
Cmo04g00786 341 ProSiteProfiles B3 DNA-binding domain profile. 40 145 IPR003340 GO:0003677
Cmo04g00786 341 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 304 IPR044800 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00786 Cmo-Chr4:3937439 Cmo17g00535 Cmo-Chr17:5282653 6.08E-69 dispersed
Cmo16g00647 Cmo-Chr16:3189084 Cmo04g00786 Cmo-Chr4:3937439 1.18E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9560 PF02362 B3 5.40E-28 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00786 - - cmax:111480823 598.586