Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00786 | ATGGATTTGGGTTCGTGTTCTAGATTTCCGCTTGATTCAAGCACAGATTTTGAAAAGGAGCAGCAGCAACAGCAAGAAATGGAATCCAGCTCCCTTTTTGTTGAGAAAGAGCACATGTTCGACAAAGTTGTGACTCCAAGCGATGTGGGAAAATTAAACCGGTTGGTCATCCCAAAGCAACACGCTGAAAAGTACTTCCCGCTTGATTCTTCATCCAACGACAAGGGTCTTCTCTTGAACTTCGAAGACCGCTGTGGAAAATCGTGGCGGTTCCGTTACTCTTACTGGACCAGCAGCCAGAGCTACGTCATGACTAAAGGCTGGAGCCGCTTTGTTAAAGAGAAGCGCCTCGATGCTGGTGATATCGTCTCCTTTCAACGAGGCCTTGGTCATCTTGGTAAAGATCGGTTTTTTATTGATTGGCGCCGCCGCCCACCTCATGCCCCGCTTGACACACCTATTACTTTTCACCACAACCACCACCTCCACGGCGGTGGAGCCGCCGGCGTTGCCCAAATTCCTCACCATTTTCACCTTCACCAGTGGACTCCAGTTGCCACACCCTTATCTTTACCCAGGGACCACCTCCTCCACTTGCCGCAGAATAATAGTAATCATAATAATCTTACCCTATTTCATAATGATAATTTTAATCTCTATAATCATCATTATCATCATCATTATCTTAACCCTCCTCCCATCCAAGACGGCGGTGGTTCGCCATCGGTTTTGTACCATTTAAGATCTGCGCCGCCACCGCCACCCGTGGCGGTGGGCGGTGGTGGCCGTGGAATTGGGAAAGGTGCTGCTTCTTCTAAGACATTGAGACTTTTTGGTGTCAACATGGAATGTGCAGTGTCTGAAGATCAATCTGATGATGAATGTGACATAACAACCTCGACTACGACAATGTCGCCTCAATTCCGCGTTTACGATGGAATGCCGATGTCGATACCGATACGGATGCCGAACAGTAACAACAAGCTGACGACCGACTTTTTCAATAAAGGGAAGTCGTCAAATTGA | 1026 | 47.76 | MDLGSCSRFPLDSSTDFEKEQQQQQEMESSSLFVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNDKGLLLNFEDRCGKSWRFRYSYWTSSQSYVMTKGWSRFVKEKRLDAGDIVSFQRGLGHLGKDRFFIDWRRRPPHAPLDTPITFHHNHHLHGGGAAGVAQIPHHFHLHQWTPVATPLSLPRDHLLHLPQNNSNHNNLTLFHNDNFNLYNHHYHHHYLNPPPIQDGGGSPSVLYHLRSAPPPPPVAVGGGGRGIGKGAASSKTLRLFGVNMECAVSEDQSDDECDITTSTTTMSPQFRVYDGMPMSIPIRMPNSNNKLTTDFFNKGKSSN | 341 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 3937439 | 3938464 | - | CmoCh04G007860.1 | Cmo04g00786 | 379761 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00786 | 341 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Cmo04g00786 | 341 | SMART | B3_2 | 40 | 145 | IPR003340 | GO:0003677 | |
Cmo04g00786 | 341 | Gene3D | - | 33 | 159 | IPR015300 | - | |
Cmo04g00786 | 341 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 | 20 | 304 | - | - | |
Cmo04g00786 | 341 | Pfam | B3 DNA binding domain | 40 | 144 | IPR003340 | GO:0003677 | |
Cmo04g00786 | 341 | SUPERFAMILY | DNA-binding pseudobarrel domain | 37 | 142 | IPR015300 | - | |
Cmo04g00786 | 341 | CDD | B3_DNA | 38 | 127 | IPR003340 | GO:0003677 | |
Cmo04g00786 | 341 | ProSiteProfiles | B3 DNA-binding domain profile. | 40 | 145 | IPR003340 | GO:0003677 | |
Cmo04g00786 | 341 | PANTHER | B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 | 20 | 304 | IPR044800 | GO:0003700 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00786 | Cmo-Chr4:3937439 | Cmo17g00535 | Cmo-Chr17:5282653 | 6.08E-69 | dispersed | |
Cmo16g00647 | Cmo-Chr16:3189084 | Cmo04g00786 | Cmo-Chr4:3937439 | 1.18E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9560 | PF02362 | B3 | 5.40E-28 | CL0405 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00786 | - | - | cmax:111480823 | 598.586 |