Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00791 ATGCTGGAACCGGAGTTTTGTGCTTCTAGAATTCAGTCTCCTTTTCGTGAGGAGAGTTGGGATGAAGAGCTTTCAGTTCTTCCAAGGCACACTAAAGTTATTGTCACTGGAAATAACAGAACAAAGTCTGTTTTACTGGGATTGCAAGGCGTAGTTAAGAAGGCTGTTGGCCTTGGAGGCTGGCATTGGCTGGTTTTGAAAAATGGGGTTGAAGTGAAGCTGCAAAGGAATGCACTGAGTGTGCTGGAACATCCCACAGGAAACAAAAATGATGATCATGATTTGGACAACTCAAGTTGTAGCTCCGACATGGGTGAGAAGGACAATGATCTGTCTAGCAGCATTGTTTTCCACAAGATAAGCAAACAAAGAGTGAGACAAATTAGGCCATGGGCTCCATCTTCATCGGCAAAGCCAACAGGTCGGGGCAGCTGTGGGGAAATTCAATCTATTCACATGCCGAAACTGGTCACGCGGGTGAAACTGGGGAAACTAGGAACAGAATCTTTGTGGAGATACATCAGGCACTTCAATCTAGTGAATAGCATTTCAAATGCTTCAAGGGACCAAATCCTTCACGTTGTGCAACGACATTTTGCATTACAGACGAGCTTGAACGAGGCATCAGTGATGACTGAATTCATTCGCACTGTTAAGAGACGAAGGGAGTGA 672 44.94 MLEPEFCASRIQSPFREESWDEELSVLPRHTKVIVTGNNRTKSVLLGLQGVVKKAVGLGGWHWLVLKNGVEVKLQRNALSVLEHPTGNKNDDHDLDNSSCSSDMGEKDNDLSSSIVFHKISKQRVRQIRPWAPSSSAKPTGRGSCGEIQSIHMPKLVTRVKLGKLGTESLWRYIRHFNLVNSISNASRDQILHVVQRHFALQTSLNEASVMTEFIRTVKRRRE 223
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3953402 3955854 - CmoCh04G007910.1 Cmo04g00791 379766

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00791 223 MobiDBLite consensus disorder prediction 86 103 - -
Cmo04g00791 223 MobiDBLite consensus disorder prediction 83 108 - -
Cmo04g00791 223 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 165 219 IPR025718 GO:0005515
Cmo04g00791 223 PANTHER SAP30 1 222 IPR024145 -
Cmo04g00791 223 PANTHER OS04G0166600 PROTEIN 1 222 - -
Cmo04g00791 223 Gene3D - 147 223 IPR038291 -
Cmo04g00791 223 Coils Coil 215 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00791 - - - csv:101209634 405.601
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01952 Cmo-Chr1:13891270 Cmo04g00791 Cmo-Chr4:3953402 5.02E-56 dispersed
Cmo04g00791 Cmo-Chr4:3953402 Cmo05g00231 Cmo-Chr5:989325 8.94E-57 dispersed
Cmo04g00791 Cmo-Chr4:3953402 Cmo09g00170 Cmo-Chr9:768405 1.91E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g914 . . . . . . . . Cmo04g00791 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005484 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00791 Cmo_Chr04 FPKM 1.337625 3.295313 0.791392 1.506395 0.129813 0.161841 0.12193 0.898037 1.771784 2.070358