Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00793 ATGGGAGCTGTCGGTGACGAAGAGCTATCAATGGAAGAGACAAGTGGGCGTGAAGAGAGAATTTTGGTATCAGTTCGTCTGCGCCCTTTGAACGAGAAGGAGCTTTCAAGGAATGGCGTTTCGGAATGGGAATGCATTAACGAAAACACTATTATATGCAGGAATGGGCTTTCGGTTGCTGAACGCTCCATATATCCATCTGTGTATACATTTGACAGGGTATTCGGCTGCGGTTGCTCAACAAGGAAGGTCTATGAGGAGGGTGCGAAGGAAGTTGCTCTTTCTGTTGTCAGTGGAGTTAACTCAACTATTTTTGCTTATGGACAAACAAGCAGTGGGAAAACGTACACCATGAGTGGAATTACCGAGTATACCATCGCAGATATATATGACCACATAGAGAAGCACACGGAGAGGGATTTTCTTTTGAAGTTTTCTGCTATAGAGATATATAATGAATCTGTGAGGGACCTCCTTAGCCTAGACAATACTCCTCTCAGGCTCCTGGATGATCCTGAGAGGGGAACCACGGTTGAGAAACTCACAGAGGAAACTTTGAGGGGCTGGAATCATTTTAAACAACTTTTATATCTTTGCGAAGCTCAGAGGCAGGTAGGGGAGACATCTTTAAATGAAGCAAGCTCCAGATCTCATCAAATTCTTAGATTGACAGTTGAGAGCTCAGCTCGTGAATTTCTTGGCAATGACAAATCTAGTTCTCTCACGGCTACTGTGAATTTTGTCGATCTGGCAGGAAGTGAACGTGCATCTCAGTCGTTATCAGCTGGTGCACGCCTGAAAGAAGGTTGTCACATAAATCGTAGTCTACTAACTCTTGGGACTGTTATTCGTAAGCTCAGTAAGGGAAGAAATGGACATATTCCTTTCAGGGATTCAAAGTTAACTCGTATATTGCAATCTTCCTTGGGAGGCAATGCCAGAACTGCCATCATATGTACCATGAGCCCTGCTCAAATCCATGTTGAGCAATCAAGAAATACACTCTTTTTTGCAAGTTGTGCTAAAGAAGTTGTAACTAATGCTCAGGTGAATGTAGTTGTGTCCGATAAGGCTCTAGTAAAACAACTGCAAAGAGAATTGGCAAGGTTGGAAAGTGAGTTAAGAAGCTGTGGACAAGCTTCTGTATCAACCGATTCTACATTAATTAGAGAAAAAGATATCCAGATTGAAAAGCTAAAGAAGGACTTAAGAGAACTTACCTTGGAACGAGACTATGCTCAATCTCAGGTTAAAGATCTGCTTAAAATGGTTGAAGAGGACAAACCTTTAATATCATCGACAGAATCAGATGATCAATACCCAAAATTACAGGCACGGTCTTCATGGAACTTTGAGAATCGCCCATCTGAGACAACAGTAATGACATATTCTCGAATCCATGGTGATGTTTCTGGATCTTTTGATCCATCTCAATATTCAGGTGCTAATAGCAGGTCTGATGATAATTTTATGCATCTTGTTGAAGTTGAAAAGAATTTTCTGCAAGGTAAATCCTCTCCACGAGTATCGTCAATGGTTCCCTTTCGGGTTGATGCTCAACAGCACATGGAGGTAGAAGAACTGTCCTGTGAGAACTCTGAGGATATATGCAAGGAAGTTCGATGTATTGAGATGGAAGAATCAAGTGTGAATGGATACTTAGTTTCTACCATGCCAGGTTCTAGCCCAGAAAGATATATTGATTCGACTGCTCCCTCTCCACTAGCAAACACAACCACCTCAAAAGTAGCTGATAATGGGCAAAGTAAAAACTGTAAATTAGAATCATCCCCTTCAGGAGAAGATATCGAGTCCAACAACTTCAGTCCCTTCTATGTAGTCCAATCCCCAGAGACACCTTCGCCATGGGTGCTGGAGAAAGATATCTGTTGCTCTGGAGGGTTAAAGTTAACTAGGAGTAAAAGTTGTATAACTAGTCTTACAAGAAGCTTATCTACAGAGAACATCAAGGAAATCCAGGGCACACCACCAATTTGGAATGGAAAATACTTCATAGGGAGACCTGAGGGTTTCCAAAAAAAACTTGCTGCATTGAAATATGATGTTGAGAATGAGAGGTCGTCAGTAACTTGTTCTCAAACTTCCCAGAAGAGTGCTTCTAAGGATGCGGTTAGTGAACAGAATATTGATGTGTTAGAAGATGACAAAAGTGATATAACTACTTCGGCTACAGAGGTAGAACATGACCAGATATCCAAAGTTGAAAGCGAAAATAAACTTCTTGATACAACAAAGCAGATGTCCAACCTGGAAACTGAAAATTGTCTTCTTGATGCAACAGTGCCTGGGGCTAAACCAAAGCCAATTGAATCCGAGAAAAATGTGGAAGATCTCAGCATGGTTTCAACCGTAAGTGACAGGATAAGTCCTTCAAAATGGCCTTCGGAATTCAAAAGGCTTCAAAAAGACATCATTGAATTGTGGCATACTTCTTACGTCTCATTGGTGCATAGAACCTATTTTTTCCTTCTATTTAAAGGTGGCGATCCAGCTGATTCTATTTACATGGAGGTAGAGTTCAGAAGACTATCTTTCCTCAAACACACATTTTCTCAGGGAAATCGAACAGTAGAAAATGGCCAAACACAACCAGCATTGAGTCTGAAGGCCCTTCGCGGTGAGAGGCAAATGTTGTGCAGACAAATGCAGAAGAGGCTCTCCAAGAAACAAAGAGAGGCCCTGTTTGTGGAATGGGGCATCGGATTGAATTCTAACAATCGGAGGCTGCAATTGGCTCACCTTCTGTGGAATGATGCAAAAGATATGGATCACGTAAGAAGGAGCGCAGCCATTGTTGCACAACTTGTTAACTACGTAGAACCAGATGAGGCTTCCAGAGAGATGTTTGGCCTCAATTTCGCTCCACGGCCCGATGCTCGAGGGATCACATCGTTGGAAACAAAGAATGAAGGCTGCCTTCTAATTTCTTTGAAGTTTTTTCGAGGAAAATTTTGGCGCCGTCTTAGCTTCTTTGAAGATCCTGGAAGTGTAGCCATGGCTATGCAGCAGCAACATCTTGATAAGATGCAACTCCGCCAGAGCTATCGTAATCTCTGGCATACTGACCTAATTCATACAATTCAGGCCGACACTCCCTATTGCTGCCTTGCCTTGTGGTGGAAGATGGATTTAGAGGAAGATACTGTCGAAGTTAAAGATAATTGCTGTGGGTTCATATTAGCAGAGGTGGATTTGTGGCCGTCTCTGGTGTTCACAAATTTTTCCAAGTGGTGGCTATGCCTGTGGCTCATTCTAATTCCCCATGTGGACCCTGTGTATCGTATTTGCTTCGTAAAAGAGCTCTATATAATGACATGTCAAGGTATGTCTGCTGTGCAGGCTATATGCCTTGCAGTGGCCGGTGTGGAGAAAGTAAATGCCCTGAATTTTGCCTTTGCACAGAGGTTTTCCTCTGCTTTGGGAATTCAGTGGCCTCAACTTGATTCTTGTTGCAAGACGAATTCAACATACAGACAACAAAATGGTTTTATGTTCTGTCTACAACAAATAGCATGTATATTTTCCATCGTCGCACTGATAGTAGGAAGTGAAGAAATTCAAGAGGCTTCTCAGCTTCTGTCATGCTTGGCTGATATGGTGTATTGCTCGGTTTGCGCATGTATGCAGACCCAACACAAGATTGAGATGGACAAGAGAGATGGCATGTTTGGACCGCAAGTAATGGCAGTGCCTCCTTTTCAACAGATGTCTCGGATCGATCAAGCAATTCCTCCCTCAGTTGGACATGCACCACAGCCTGCATATGGACAACCCTATCCTGCTCAAGGCTATCCAGCTCCGGGCTATCCACAATCATCTTATGGCCCCTCTGGACATAACTACTAG 3867 42.77 MGAVGDEELSMEETSGREERILVSVRLRPLNEKELSRNGVSEWECINENTIICRNGLSVAERSIYPSVYTFDRVFGCGCSTRKVYEEGAKEVALSVVSGVNSTIFAYGQTSSGKTYTMSGITEYTIADIYDHIEKHTERDFLLKFSAIEIYNESVRDLLSLDNTPLRLLDDPERGTTVEKLTEETLRGWNHFKQLLYLCEAQRQVGETSLNEASSRSHQILRLTVESSAREFLGNDKSSSLTATVNFVDLAGSERASQSLSAGARLKEGCHINRSLLTLGTVIRKLSKGRNGHIPFRDSKLTRILQSSLGGNARTAIICTMSPAQIHVEQSRNTLFFASCAKEVVTNAQVNVVVSDKALVKQLQRELARLESELRSCGQASVSTDSTLIREKDIQIEKLKKDLRELTLERDYAQSQVKDLLKMVEEDKPLISSTESDDQYPKLQARSSWNFENRPSETTVMTYSRIHGDVSGSFDPSQYSGANSRSDDNFMHLVEVEKNFLQGKSSPRVSSMVPFRVDAQQHMEVEELSCENSEDICKEVRCIEMEESSVNGYLVSTMPGSSPERYIDSTAPSPLANTTTSKVADNGQSKNCKLESSPSGEDIESNNFSPFYVVQSPETPSPWVLEKDICCSGGLKLTRSKSCITSLTRSLSTENIKEIQGTPPIWNGKYFIGRPEGFQKKLAALKYDVENERSSVTCSQTSQKSASKDAVSEQNIDVLEDDKSDITTSATEVEHDQISKVESENKLLDTTKQMSNLETENCLLDATVPGAKPKPIESEKNVEDLSMVSTVSDRISPSKWPSEFKRLQKDIIELWHTSYVSLVHRTYFFLLFKGGDPADSIYMEVEFRRLSFLKHTFSQGNRTVENGQTQPALSLKALRGERQMLCRQMQKRLSKKQREALFVEWGIGLNSNNRRLQLAHLLWNDAKDMDHVRRSAAIVAQLVNYVEPDEASREMFGLNFAPRPDARGITSLETKNEGCLLISLKFFRGKFWRRLSFFEDPGSVAMAMQQQHLDKMQLRQSYRNLWHTDLIHTIQADTPYCCLALWWKMDLEEDTVEVKDNCCGFILAEVDLWPSLVFTNFSKWWLCLWLILIPHVDPVYRICFVKELYIMTCQGMSAVQAICLAVAGVEKVNALNFAFAQRFSSALGIQWPQLDSCCKTNSTYRQQNGFMFCLQQIACIFSIVALIVGSEEIQEASQLLSCLADMVYCSVCACMQTQHKIEMDKRDGMFGPQVMAVPPFQQMSRIDQAIPPSVGHAPQPAYGQPYPAQGYPAPGYPQSSYGPSGHNY 1288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3962338 3974572 - CmoCh04G007930.1 Cmo04g00793 379768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00793 1288 PANTHER KINESIN-LIKE PROTEIN KIN-7H 12 966 - -
Cmo04g00793 1288 Gene3D Kinesin motor domain 10 375 IPR036961 -
Cmo04g00793 1288 ProSitePatterns Kinesin motor domain signature. 243 254 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo04g00793 1288 Coils Coil 353 380 - -
Cmo04g00793 1288 Coils Coil 740 760 - -
Cmo04g00793 1288 PANTHER CENTROMERE PROTEIN E 12 966 - -
Cmo04g00793 1288 Coils Coil 389 416 - -
Cmo04g00793 1288 CDD KISc_CENP_E 21 344 - -
Cmo04g00793 1288 Pfam Domain of unknown function (DUF3490) 803 962 IPR021881 -
Cmo04g00793 1288 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 377 IPR027417 -
Cmo04g00793 1288 SMART kinesin_4 18 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 MobiDBLite consensus disorder prediction 1269 1288 - -
Cmo04g00793 1288 ProSiteProfiles Kinesin motor domain profile. 20 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 MobiDBLite consensus disorder prediction 569 602 - -
Cmo04g00793 1288 Pfam Kinesin motor domain 26 344 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 PRINTS Kinesin heavy chain signature 244 262 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 PRINTS Kinesin heavy chain signature 294 315 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 PRINTS Kinesin heavy chain signature 99 120 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo04g00793 1288 PRINTS Kinesin heavy chain signature 208 225 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00793 K11498 CENPE; centromeric protein E - csv:101218717 1531.15
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00793 Cmo-Chr4:3962338 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo16g00659 Cmo-Chr16:3251367 Cmo04g00793 Cmo-Chr4:3962338 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1085 . . . . . . . . Cmo04g00793 . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0729 Cone6ag1670 Cone9ag1592 . . Chy07g01228 . Blo05g00823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00582 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005179 0 5 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 0 1 1 6 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00793 Cmo_Chr04 FPKM 4.11592 3.954812 4.385586 4.243744 4.791413 4.787539 4.622013 3.309249 3.594859 2.800831