Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo04g00794 | ATGAGAACACTTTGTGACTCTTGTGAAAGCGCTGCCGCTATCGTCTTTTGTGCTGCTGACGAAGCCGCCCTTTGCCGCTCTTGTGATGAGAAGGTCCATCTGTGCAATAAACTCGCAAGTCGACATGTAAGAGTTGGCCTTGCAAGTCCCAGTGATGTCCCCCGCTGCGATATATGCGAGAATGCACCTGCTTTCTTTTACTGTGAGATAGATGGAAGTTCCCTTTGTTTGCAATGTGACATGGTCGTTCATGTTGGAGGGAAAAGGACACATAAGAGATACCTTTTGCTAAGGCAGAGGTTTGAGTTTCCAGGAGACAAACCTATAAACCTTGGTGAGCCGTCTCCACATTCCAAGGTTCCCAATAATATTGGTAGAGGGCATAACCAGACACTGCCGCATAAAGTCGCCGTGGAAGACAACCAGCGAAATCATCACCGATTATCGCCTGTTCGGGAGGCTAATGATGATGGTCATGCAGAGACTGATACGAAAATGATCGATTTGAATATGAAGCCTCAAAGGGTCCATGGGCAGGCTGCTAATAATCAGGATCTATGA | 561 | 47.06 | MRTLCDSCESAAAIVFCAADEAALCRSCDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCEIDGSSLCLQCDMVVHVGGKRTHKRYLLLRQRFEFPGDKPINLGEPSPHSKVPNNIGRGHNQTLPHKVAVEDNQRNHHRLSPVREANDDGHAETDTKMIDLNMKPQRVHGQAANNQDL | 186 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 3978002 | 3981615 | + | CmoCh04G007940.1 | Cmo04g00794 | 379769 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo04g00794 | 186 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
| Cmo04g00794 | 186 | PANTHER | B-BOX ZINC FINGER PROTEIN 19 | 1 | 184 | - | - | |
| Cmo04g00794 | 186 | MobiDBLite | consensus disorder prediction | 107 | 159 | - | - | |
| Cmo04g00794 | 186 | SMART | bboxneu5 | 1 | 47 | IPR000315 | GO:0008270 | |
| Cmo04g00794 | 186 | SMART | bboxneu5 | 51 | 96 | IPR000315 | GO:0008270 | |
| Cmo04g00794 | 186 | MobiDBLite | consensus disorder prediction | 138 | 159 | - | - | |
| Cmo04g00794 | 186 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
| Cmo04g00794 | 186 | CDD | Bbox1_BBX-like | 56 | 96 | - | - | |
| Cmo04g00794 | 186 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 184 | - | - | |
| Cmo04g00794 | 186 | SUPERFAMILY | B-box zinc-binding domain | 48 | 88 | - | - | |
| Cmo04g00794 | 186 | Pfam | B-box zinc finger | 52 | 92 | IPR000315 | GO:0008270 | |
| Cmo04g00794 | 186 | Pfam | B-box zinc finger | 3 | 42 | IPR000315 | GO:0008270 | |
| Cmo04g00794 | 186 | Gene3D | Classic Zinc Finger | 2 | 96 | - | - | |
| Cmo04g00794 | 186 | ProSiteProfiles | Zinc finger B-box type profile. | 51 | 96 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo04g00794 | Cmo07g00440 | CCT | |
| Cmo03g00728 | Cmo04g00794 | CCT | |
| Cmo03g00728 | Cmo04g00794 | ECH | |
| Cmo04g00794 | Cmo07g00440 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo03g00728 | Cmo-Chr3:6238667 | Cmo04g00794 | Cmo-Chr4:3978002 | 7.83E-73 | dispersed | |
| Cmo04g00794 | Cmo-Chr4:3978002 | Cmo07g00440 | Cmo-Chr7:2026405 | 3.03E-56 | dispersed | |
| Cmo16g00660 | Cmo-Chr16:3268929 | Cmo04g00794 | Cmo-Chr4:3978002 | 5.37E-56 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 9561 | PF00643 | zf-B_box | 6.10E-07 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo04g00794 | - | - | csv:101208899 | 366.311 |