Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00795 ATGAGCAAGGTCGTGATGGTTGCTCGATTGTGGCTGGCGGTGGCGATGGCGGTGTTTTCATCGGCCTTCGTAAACGGCCATGTGACGCTTGGGTGGCTGTCTACAAGAAGCGAGTTCTTAACCCAGGAGGAGTTTTGGTTTGACCAGACCCTCGATCACTTCTCTCATTATAACCGTCACAAGTTTCAGCAGCGCTATTTTGAATTCCTTGACTACTTTCGGATACCGGACGGGCCAATATTTTTTAGAATCTGTGGTGAAGGCCCCTGCAACGGGATTGCCAACGATTACCTAAGTATTCTGGCAAAGAAGTTTGGAGCAGCCATTGTTTCTCTTGAGCATCGCTACTATGGGAAGAGTTCTCCTTTCAAGTCATTGACGACAAATAACTTGAGATATCTTTCATCCAAGCAAGCTTTGTTTGATTTGGCTGTTTTTCGTCAGTATTATCAGGATTCCTTAAATCTGAAACTGGACAGAAAGAGTGAAAACCCGTGGTTCGTTTTTGGTGTTTCATATTCAGGAGCTCTTAGTGCTTGGTTTCAACTTAAGTTTCCTCATTTAACGTGTGGAAGTCTCGCAAGTTCTGCTGTTGTCCTTGCCGTCTTTAATTTCACTGATTTTGATCAACAGATTGGCGAGTCTGCTGGTCCAGCTTGTAAGGCTGCTTTACAAGAAACCAATCAACTTGTTGAGCAAAGGTTTGCAATCAACAAAGAAGAAGTACAGGCATTGTTTGGTGCGGAAGAGATGGAAGTGGATGGGGATTTCTTTTATTTCCTGGCAGATGCTGCTGCTATGGCGTTTCAGTATGGAAATCCAGATAAATTGTGTTGTCCTCTTGTTGAAGCAAAGAACGCGGGAAAGGATTTAGTGGATGCCTATGCCAAATACGTTAAAAATTATTTCCTTGGAAGTTTTGGTTCAAACGTTCGGACTTACATTCAGAAACACTTGAAAAACACCACTCTGGGTGAAGATAGTGCTGACCGGTTGTGGTGGTTCCAAGTTTGTACTGAAGTTGCATATTTTCAGGTAGCACCTGCAAATGATAGCATTCGATCCTCCAAAGTTGATATAAGCTATTTGTTTACAAATAACTCAAGTAACCACAGATATCATCTGGATCTCTGCAAAAATGTTTTCGGAGAGGGCCTCTATCCTGATGTAGACACTACCAATATTTACTATGGAGGCACAAAAATTGCTGGTGTGTACTCGGGACTTCTTTTCTGGCTACCTCTACTTCACTTTAGTGTATTATACAATAGTACTTTGTATGAAAGCACTTCTTGGCCAGTTCAACAAAACTTCCAAAGCTTTTCCCTTGTAGATAAGCTTTACCTTTCAATGACCAACTGTTCAAAAATAGTTTTTACAAATGGTTCGCAGGATCCTTGGCGCCATGCATCCAAGCAAATACCATCTCCAGACATGCCATCGTACCTCTTGACATGTCGCAACTGTGGTCATGGAACTGATTTGCGAGGATGTCCTCAATCTCCACCAAATATTGAAGGTGATGCTCACAGCTGTACCTCCCCTGCTACAGTTTACAAAGTTAGGCAGCAGTTAGTGAAAAAGATGGACCTTTGGCTGTCGGAGTGCCAAGCCTCTATTAATAGGAAATATGTTTGA 1638 42.61 MSKVVMVARLWLAVAMAVFSSAFVNGHVTLGWLSTRSEFLTQEEFWFDQTLDHFSHYNRHKFQQRYFEFLDYFRIPDGPIFFRICGEGPCNGIANDYLSILAKKFGAAIVSLEHRYYGKSSPFKSLTTNNLRYLSSKQALFDLAVFRQYYQDSLNLKLDRKSENPWFVFGVSYSGALSAWFQLKFPHLTCGSLASSAVVLAVFNFTDFDQQIGESAGPACKAALQETNQLVEQRFAINKEEVQALFGAEEMEVDGDFFYFLADAAAMAFQYGNPDKLCCPLVEAKNAGKDLVDAYAKYVKNYFLGSFGSNVRTYIQKHLKNTTLGEDSADRLWWFQVCTEVAYFQVAPANDSIRSSKVDISYLFTNNSSNHRYHLDLCKNVFGEGLYPDVDTTNIYYGGTKIAGVYSGLLFWLPLLHFSVLYNSTLYESTSWPVQQNFQSFSLVDKLYLSMTNCSKIVFTNGSQDPWRHASKQIPSPDMPSYLLTCRNCGHGTDLRGCPQSPPNIEGDAHSCTSPATVYKVRQQLVKKMDLWLSECQASINRKYV 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3982886 3988410 + CmoCh04G007950.1 Cmo04g00795 379770

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00795 545 Pfam Serine carboxypeptidase S28 49 401 IPR008758 GO:0006508|GO:0008236
Cmo04g00795 545 PANTHER OS10G0511600 PROTEIN 23 404 - -
Cmo04g00795 545 Gene3D alpha/beta hydrolase 294 537 IPR029058 -
Cmo04g00795 545 SUPERFAMILY alpha/beta-Hydrolases 71 272 IPR029058 -
Cmo04g00795 545 Gene3D alpha/beta hydrolase 41 272 IPR029058 -
Cmo04g00795 545 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 453 540 - -
Cmo04g00795 545 PANTHER PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED 23 404 - -
Cmo04g00795 545 PANTHER OS10G0511600 PROTEIN 453 540 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00795 - - - bhj:120092798 786.949
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00795 Cmo-Chr4:3982886 Cmo04g02011 Cmo-Chr4:10726535 1.09E-26 dispersed
Cmo16g00661 Cmo-Chr16:3277588 Cmo04g00795 Cmo-Chr4:3982886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1082 . Blo16g00073 . . . Bpe13g00424 . . Cmo04g00795 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1667 Cone9ag1589 . . Chy07g01229 . . . Bda11g01844 . . . . Bma06g00104 . . . . . . . . . . . . . . . . . . . . . . . . Csa04g00580 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003706 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 2 1 2 7 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00795 Cmo_Chr04 FPKM 2.867028 4.370832 0.0 0.344105 1.358612 0.0 0.353811 2.52929 1.871388 3.110389