Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00803 ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAACGAGGAGAAGAAGGGAGCAGGCACTGGCGAAACCGAACAATGTCGCATATTGCACCTGATCAAGTACCTTCTTCATCGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCAGAATTACTTTTAGACATCATCCGGAGAGTGGAACAGAGTGAAACTTCATGGCCTGCTCGATCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCCGAGCAGTGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTTCTTTATCAAAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCCTCGGAGGTCAAAAAGGACAAATTGTTGTTAGCAGCCAAAAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACAAAGTTCTCAATTTACGATAGCCAACCTCCTTGTGACCCTGCAGCTCAGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATTTAATTACTGTGTAGGTACAATTTCTTATGAACTTAACGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACCATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCACATACTCTATCGATGACCACCTTTCTACCATGTCGGATTCTATGAGAAAGGGTTCAGCCAAGGACTTTAGCCCAAAGACCCTATCAGAACCAGCAGTTCAAGATTTGGATGAATCCTTGGTGCTTAAAAACAAGGCGCCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTAAATTTCAGGGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTTGTTGCAGCCGTCGATCAATCGCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATAGCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACCAAGCCAGCCTGCGAATGA 1242 45.89 MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQVPSSSELIQQGRWANLPPELLLDIIRRVEQSETSWPARSVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQFFIKRDRATSTYLLYFGMVPSEVKKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQNSRSSRRFRSKQVSPRVPAFNYCVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSTMSDSMRKGSAKDFSPKTLSEPAVQDLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDSFTMDYHYPLSAFQAFAICLSSFDTKPACE 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4013710 4015532 + CmoCh04G008030.1 Cmo04g00803 379778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00803 413 PRINTS Tubby superfamily signature 171 187 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 187 211 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 236 263 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Cmo04g00803 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Cmo04g00803 413 PANTHER TUBBY-RELATED 1 413 - -
Cmo04g00803 413 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 413 - -
Cmo04g00803 413 MobiDBLite consensus disorder prediction 208 223 - -
Cmo04g00803 413 Gene3D Tubby Protein; Chain A 114 413 IPR025659 -
Cmo04g00803 413 Gene3D - 50 104 - -
Cmo04g00803 413 Pfam F-box domain 56 102 IPR001810 GO:0005515
Cmo04g00803 413 Pfam Tub family 117 408 IPR000007 -
Cmo04g00803 413 SUPERFAMILY F-box domain 49 100 IPR036047 GO:0005515
Cmo04g00803 413 SUPERFAMILY Tubby C-terminal domain-like 105 413 IPR025659 -
Cmo04g00803 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Cmo04g00803 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Cmo04g00803 413 MobiDBLite consensus disorder prediction 207 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01979 Cmo-Chr1:14009925 Cmo04g00803 Cmo-Chr4:4013710 6.07E-173 dispersed
Cmo04g00803 Cmo-Chr4:4013710 Cmo09g00146 Cmo-Chr9:656942 0 dispersed
Cmo16g00672 Cmo-Chr16:3330233 Cmo04g00803 Cmo-Chr4:4013710 0 wgd
Cmo04g00803 Cmo-Chr4:4013710 Cmo07g00480 Cmo-Chr7:2191845 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9562 PF01167 Tub 1.20E-103 CL0395 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00803 K19600 - csv:101205595 747.273