Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00803 | ATGTCGCTTAAAAGTTTTGTTAGAGAGCTGCGAGAGATGAAAGATGGAATTGGGAGCATTTCTAAACGAGGAGAAGAAGGGAGCAGGCACTGGCGAAACCGAACAATGTCGCATATTGCACCTGATCAAGTACCTTCTTCATCGGAGTTAATTCAGCAAGGTCGATGGGCAAATCTGCCCCCAGAATTACTTTTAGACATCATCCGGAGAGTGGAACAGAGTGAAACTTCATGGCCTGCTCGATCTGTAGTTGTTTCTTGTGCTTCAGTTTGTAGGTCTTGGAGGGCCATTACAAAGGAGATTATCAGAACTCCCGAGCAGTGTGGAAGGCTCACATTTCCAATCTCATTAAAGCAGCCTGGCCCTCGGGAGTCTCCATTTCAGTTCTTTATCAAAAGGGATAGAGCAACTTCGACCTACCTCCTGTACTTTGGCATGGTTCCCTCGGAGGTCAAAAAGGACAAATTGTTGTTAGCAGCCAAAAGGGTCAGAAGAGCAGCCGGTACTGACTTTATCATATCTTTGGCAGCTGATGATTTTTCTCGAGCGAGTAGTACCTATGTTGGTAAATTAAGGTCTAATTTCCTGGGTACAAAGTTCTCAATTTACGATAGCCAACCTCCTTGTGACCCTGCAGCTCAGCAAAATAGTCGATCAAGCCGTAGATTTCGCTCTAAGCAAGTCTCTCCTAGAGTACCTGCATTTAATTACTGTGTAGGTACAATTTCTTATGAACTTAACGTTCTTCGCACTAGAGGTCCTCGGAGGATGCAGTGCATCATGCAAACCATTCCAGTCTCTTCAATTCAGGAGGGAGGCACTGCCCCAACACCAACATCATTCACATACTCTATCGATGACCACCTTTCTACCATGTCGGATTCTATGAGAAAGGGTTCAGCCAAGGACTTTAGCCCAAAGACCCTATCAGAACCAGCAGTTCAAGATTTGGATGAATCCTTGGTGCTTAAAAACAAGGCGCCGAGATGGCACGAGCAGCTGCAGTGCTGGTGTCTAAATTTCAGGGGACGTGTGACCGTGGCATCTGTTAAGAACTTCCAACTTGTTGCAGCCGTCGATCAATCGCACAATGTTTCAGTGGAAGAGCAAGAGAAGGTAATTCTCCAGTTCGGAAAAATTGGAAAAGATAGCTTCACCATGGATTACCACTATCCGCTCTCTGCATTCCAAGCTTTTGCTATCTGCTTGAGCAGCTTCGACACCAAGCCAGCCTGCGAATGA | 1242 | 45.89 | MSLKSFVRELREMKDGIGSISKRGEEGSRHWRNRTMSHIAPDQVPSSSELIQQGRWANLPPELLLDIIRRVEQSETSWPARSVVVSCASVCRSWRAITKEIIRTPEQCGRLTFPISLKQPGPRESPFQFFIKRDRATSTYLLYFGMVPSEVKKDKLLLAAKRVRRAAGTDFIISLAADDFSRASSTYVGKLRSNFLGTKFSIYDSQPPCDPAAQQNSRSSRRFRSKQVSPRVPAFNYCVGTISYELNVLRTRGPRRMQCIMQTIPVSSIQEGGTAPTPTSFTYSIDDHLSTMSDSMRKGSAKDFSPKTLSEPAVQDLDESLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDQSHNVSVEEQEKVILQFGKIGKDSFTMDYHYPLSAFQAFAICLSSFDTKPACE | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4013710 | 4015532 | + | CmoCh04G008030.1 | Cmo04g00803 | 379778 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 171 | 187 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 187 | 211 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 236 | 263 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 323 | 340 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 341 | 357 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 370 | 389 | IPR000007 | - | |
Cmo04g00803 | 413 | PRINTS | Tubby superfamily signature | 391 | 413 | IPR000007 | - | |
Cmo04g00803 | 413 | PANTHER | TUBBY-RELATED | 1 | 413 | - | - | |
Cmo04g00803 | 413 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 1 | 413 | - | - | |
Cmo04g00803 | 413 | MobiDBLite | consensus disorder prediction | 208 | 223 | - | - | |
Cmo04g00803 | 413 | Gene3D | Tubby Protein; Chain A | 114 | 413 | IPR025659 | - | |
Cmo04g00803 | 413 | Gene3D | - | 50 | 104 | - | - | |
Cmo04g00803 | 413 | Pfam | F-box domain | 56 | 102 | IPR001810 | GO:0005515 | |
Cmo04g00803 | 413 | Pfam | Tub family | 117 | 408 | IPR000007 | - | |
Cmo04g00803 | 413 | SUPERFAMILY | F-box domain | 49 | 100 | IPR036047 | GO:0005515 | |
Cmo04g00803 | 413 | SUPERFAMILY | Tubby C-terminal domain-like | 105 | 413 | IPR025659 | - | |
Cmo04g00803 | 413 | ProSitePatterns | Tub family signature 2. | 398 | 413 | IPR018066 | - | |
Cmo04g00803 | 413 | ProSitePatterns | Tub family signature 1. | 341 | 354 | IPR018066 | - | |
Cmo04g00803 | 413 | MobiDBLite | consensus disorder prediction | 207 | 227 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01979 | Cmo-Chr1:14009925 | Cmo04g00803 | Cmo-Chr4:4013710 | 6.07E-173 | dispersed | |
Cmo04g00803 | Cmo-Chr4:4013710 | Cmo09g00146 | Cmo-Chr9:656942 | 0 | dispersed | |
Cmo16g00672 | Cmo-Chr16:3330233 | Cmo04g00803 | Cmo-Chr4:4013710 | 0 | wgd | |
Cmo04g00803 | Cmo-Chr4:4013710 | Cmo07g00480 | Cmo-Chr7:2191845 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9562 | PF01167 | Tub | 1.20E-103 | CL0395 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00803 | K19600 | - | csv:101205595 | 747.273 |