Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00808 | ATGTGGCAAACTCTGTTTGAAATCGATACTAAGTATGTCCCAATCAAGCCCATTGGACGAGGATCTTACGGTGTGGTGTGTTCTTCTGCCAACCAACAGACCAACGAGAAGGTGGCTATCAAAAAGATTAAAAATGTGTTTGAGAATCGCTTCGAGGCATTGAGAACGCTCAGGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCCGCGCATAGAAATAGTTTTAAGGATGTGTATTTAGTTTATGAGCTCATGAACACTGATCTTGATCACATTATCCGATCGTCTCAGCCCCTCTCAAATAATCATGGCAAGTATTTGATGTATCAGTTGCTTTCCGGCTTGCAGTATCTTCATTCAACCAACATTCTTCATCGAGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAATTGTGATTTGAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGGTCAGGACCAAGCCATGACTGAGTACGTTGTTACTCGCGGGTATCGTGCACTAGAGCTTCTCCTATCCTGCAAGAGCTATGGGACTTCCATTGATGTGTGGTCTGTGGGATGCATCTTTGTTGAGATTTTGGGTCGGACACCGATCTTCCCTGGGACGAATTGCCTCAACCAACTAGAGTTAATCATCGAAGTTCTCGGTAGTCCAAAGGAAGCAGATATCGAGTTTATTGATAACCTAAAGTCCTTTATAAAAGCTATGCCTTCCTCAAAAGGTGTACAATTTTCCGATCAATATCCACAGGCTGAAACTTTAGCTTTGGACTTGCTGCAGAAGATGCTTGTGTTTGATTCGAGGGAGAGAATTACCATTAATGAAGCACTTCAACATCCATACATGTCCGAGCTATACGACACAGCATTCAATCCTACTGATGAGGTTCCCCTCAGTCTCGACATCGACTGA | 957 | 43.68 | MWQTLFEIDTKYVPIKPIGRGSYGVVCSSANQQTNEKVAIKKIKNVFENRFEALRTLREMKLLRHIRHENVIALKDVMMPAHRNSFKDVYLVYELMNTDLDHIIRSSQPLSNNHGKYLMYQLLSGLQYLHSTNILHRDLKPGNLLVNANCDLKICDFGLARTSKGQDQAMTEYVVTRGYRALELLLSCKSYGTSIDVWSVGCIFVEILGRTPIFPGTNCLNQLELIIEVLGSPKEADIEFIDNLKSFIKAMPSSKGVQFSDQYPQAETLALDLLQKMLVFDSRERITINEALQHPYMSELYDTAFNPTDEVPLSLDID | 318 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4041084 | 4042221 | - | CmoCh04G008080.1 | Cmo04g00808 | 379783 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00808 | 318 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 317 | - | - | |
Cmo04g00808 | 318 | SUPERFAMILY | Protein kinase-like (PK-like) | 4 | 303 | IPR011009 | - | |
Cmo04g00808 | 318 | ProSiteProfiles | Protein kinase domain profile. | 12 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00808 | 318 | PANTHER | MITOGEN-ACTIVATED PROTEIN KINASE | 1 | 317 | - | - | |
Cmo04g00808 | 318 | Gene3D | Phosphorylase Kinase; domain 1 | 2 | 95 | - | - | |
Cmo04g00808 | 318 | Gene3D | Transferase(Phosphotransferase) domain 1 | 96 | 312 | - | - | |
Cmo04g00808 | 318 | Pfam | Protein kinase domain | 13 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00808 | 318 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 134 | 146 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g00808 | 318 | ProSitePatterns | MAP kinase signature. | 47 | 150 | IPR003527 | GO:0004707|GO:0005524|GO:0006468 | |
Cmo04g00808 | 318 | SMART | serkin_6 | 12 | 297 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00808 | 318 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 42 | IPR017441 | GO:0005524 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo04g00808 | Cmo16g00687 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00808 | Cmo-Chr4:4041084 | Cmo04g00817 | Cmo-Chr4:4071702 | 0 | dispersed | |
Cmo04g00808 | Cmo-Chr4:4041084 | Cmo04g00816 | Cmo-Chr4:4066522 | 0 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
74247 | PF00069 | Pkinase | 9.60E-69 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00808 | K20537 | K20535 | csv:101203896 | 514.612 |