Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00816 ATGTGGCAAACTCTGTTTGAAATCGATACTAAGTATGTCTCCATCAAGCCCATTGGACGAGGATCTTACGGTGTGGTGTGTTCTTCTACCAACCAACAGACCAACGAGAAAGTGGCTATCAAGAAGATTAAAAATGTGTTTGAGAATCGCTTCGAGGCATTGAGAACTCTCAGGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCCGCGCATAGAAATAGTTTTAAGGATGTGTATTTAGTTTATGAGCTCATGAACACTGATCTTGATCACATTATCCGATCGTCTCAGCCCCTCTCAAATAATCATTGCAAGTATTTGATGTATCAGCCCGGGAACCTCCTCGTCAATGCTAATTGTGATCTGAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGGCCAAGACCAAGTCATGACTGAGTACGTTGTTACTCGCTGGTATCGTGCACCAGAGCTTCTCCTATCCTGCAAGAGCTATGGGACTTCCATTGATGTGTGGTCTGTGGGATGCATCTTTGCTGAGATTTTGGGTCGGACACCGATCTTCCCTGGGACGAATTGCCTCAACCAACTAGAGTTAATCATCGAAGTTCTCTGTAGTCCAAAGGAAGCAGATATCGAGTTTATTGATAACCTAAAGTCCATACAGTTTATAAAAGCTATGCCTTCCTCAAAAGGTGTACAATTTTCAGATCAATATCTCCAAGCTGAAACTTTAGCTATGGACTTGCGGCAGAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACCGTTAATGAAGCACTTCAACATCCATACATGTCCGAGCTATACGACACAGCATTCAATCCTACTGATGAGGTTCCCCTCAGTCTCGACATCGACGAATCACTTGATGAACATGAGATCAGAGAAATGATATTGACTGAGATGCTTTATTATCATCCTGAAGCTGCTACAACGTACAATCATATTGGAAGAAACACTATCTTCCATACATTTGAAATGTACTAA 1032 42.25 MWQTLFEIDTKYVSIKPIGRGSYGVVCSSTNQQTNEKVAIKKIKNVFENRFEALRTLREMKLLRHIRHENVIALKDVMMPAHRNSFKDVYLVYELMNTDLDHIIRSSQPLSNNHCKYLMYQPGNLLVNANCDLKICDFGLARTSKGQDQVMTEYVVTRWYRAPELLLSCKSYGTSIDVWSVGCIFAEILGRTPIFPGTNCLNQLELIIEVLCSPKEADIEFIDNLKSIQFIKAMPSSKGVQFSDQYLQAETLAMDLRQKMLVFDPRKRITVNEALQHPYMSELYDTAFNPTDEVPLSLDIDESLDEHEIREMILTEMLYYHPEAATTYNHIGRNTIFHTFEMY 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4066522 4067798 - CmoCh04G008160.1 Cmo04g00816 379791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00816 343 Pfam Protein kinase domain 12 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00816 343 Pfam Protein kinase domain 122 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00816 343 SUPERFAMILY Protein kinase-like (PK-like) 4 286 IPR011009 -
Cmo04g00816 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 326 - -
Cmo04g00816 343 ProSiteProfiles Protein kinase domain profile. 12 280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00816 343 Gene3D Phosphorylase Kinase; domain 1 2 95 - -
Cmo04g00816 343 Gene3D Transferase(Phosphotransferase) domain 1 122 301 - -
Cmo04g00816 343 Gene3D Transferase(Phosphotransferase) domain 1 96 121 - -
Cmo04g00816 343 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 326 - -
Cmo04g00816 343 Gene3D Phosphorylase Kinase; domain 1 302 323 - -
Cmo04g00816 343 ProSitePatterns Protein kinases ATP-binding region signature. 18 42 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00816 Cmo-Chr4:4066522 Cmo04g00819 Cmo-Chr4:4076909 0 dispersed
Cmo04g00808 Cmo-Chr4:4041084 Cmo04g00816 Cmo-Chr4:4066522 0 proximal
Cmo04g00816 Cmo-Chr4:4066522 Cmo04g00817 Cmo-Chr4:4071702 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74248 PF00069 Pkinase 9.50E-32 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00816 K20537 - csv:101203896 519.62