Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00817 ATGGCAACACCCGTCCAGCCACCCAAAGGATTTAAGTCAGCTGGTAAACATTATTACTCGATGTGGCAAACTCTGTTTGAAATCGATACTAAGTATGTCCCCATCAAGCCCATTGGACGAGGATCTTACGGTGTGGTGTGTTCTTCTACCAACCAACAGACCAATGAGAAAGTGGTATTTGAGAATCGATTCGAGGCATTGAGAACGCTCAGGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCCACGCATAGAAATAGTTTTAAGGATGTGTATTTGGTTTACGAGCTCATGAACACTGATCTTGATCACATTATCAGATCGTCTCACCCCCTTTCAAATAATCATTGCAAGTATTTGATGTATCAATTGCTCTCCGGCTTGCAGTATCTTCATTCAACCAACATTCTTCATCGGGACTTGAAGCCCGGGAACCTCCTCGTCAATGCTAATTGTGATCTAAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGGCAAGGACCAAGTCATGACTGAGTACGTTGTTACTCGTTGGTATCGTGCACCAGAGCTTCTCCTATCCTGTAACCACTATGGGACTTCCATTGATGTGTGGTCTGTGGGATGCATCTTTGCTGAGATTTTGGGTCGGACACCTATCTTCCCTGGGACGAATTGCCTCAACCAACTAGAGTTAATCATCGAAATTCTCGGTAGTCCAAAGGAAGCAGATATCGAGTTTATTGATAACCTAAAGTCCATAAAGTTCATCAAAGCTATGCCTTTCTCTAAAGGGGTACAATTTTCAGATCAATATACACAAGCTGAACCTTTAGCTTTAGACTTGTTGCAGAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACTGCTAATGAAGCACTTCAACATCCATACATGTCCGAGCTATACGACACAGAATTCAATTCTACAAATGAGGTTCCCTTCAGTCTCAACATCGACGAATCACTTGATGAGCATGAGATCAGAGAAATGATATTGACTAAGATGCTCTATTATCATCCGGAAGCTGCTCAACGTAGACATACAATCATGTTGGAAGAAACACCATCTTCCATAATTTGA 1122 42.25 MATPVQPPKGFKSAGKHYYSMWQTLFEIDTKYVPIKPIGRGSYGVVCSSTNQQTNEKVVFENRFEALRTLREMKLLRHIRHENVIALKDVMMPTHRNSFKDVYLVYELMNTDLDHIIRSSHPLSNNHCKYLMYQLLSGLQYLHSTNILHRDLKPGNLLVNANCDLKICDFGLARTSKGKDQVMTEYVVTRWYRAPELLLSCNHYGTSIDVWSVGCIFAEILGRTPIFPGTNCLNQLELIIEILGSPKEADIEFIDNLKSIKFIKAMPFSKGVQFSDQYTQAEPLALDLLQKMLVFDPRKRITANEALQHPYMSELYDTEFNSTNEVPFSLNIDESLDEHEIREMILTKMLYYHPEAAQRRHTIMLEETPSSII 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4071702 4073002 - CmoCh04G008170.1 Cmo04g00817 379792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00817 373 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo04g00817 373 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Cmo04g00817 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Cmo04g00817 373 ProSiteProfiles Protein kinase domain profile. 32 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00817 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 358 - -
Cmo04g00817 373 SMART serkin_6 32 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00817 373 Pfam Protein kinase domain 33 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00817 373 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 358 - -
Cmo04g00817 373 Gene3D Phosphorylase Kinase; domain 1 19 345 - -
Cmo04g00817 373 Gene3D Transferase(Phosphotransferase) domain 1 109 338 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00808 Cmo-Chr4:4041084 Cmo04g00817 Cmo-Chr4:4071702 0 dispersed
Cmo04g00817 Cmo-Chr4:4071702 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo04g00817 Cmo-Chr4:4071702 Cmo04g00819 Cmo-Chr4:4076909 0 proximal
Cmo04g00816 Cmo-Chr4:4066522 Cmo04g00817 Cmo-Chr4:4071702 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74249 PF00069 Pkinase 7.90E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00817 K20537 K20535 csv:101203896 582.408