Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00819 ATGGCAACACCCGTCCAGCCACCCAAAGGATTCACGTCAGCTGGGAAACATTATTACTCGATGTGGCAAACTCTGTTTGAAATAGATACTAAGTATGTCCCCATCAAGCCCATTGGACGAGGATCTTACGGTGTGGTGTGTTCTTCTACCAACCAACAGACCAACGAGAAAGTGGCTATCAAGAAGATTAAAAATGTGTTTGAGAATCGCTTCGAGGCATTGAGAACGCTCAGGGAGATGAAGCTTTTGAGGCACATAAGACATGAGAACGTGATTGCTTTGAAGGATGTGATGATGCCCGCGCATAGAAATAGTTTTAAGGATGTGTATTTAGTTTATGAGCTCATGAACACTGATCTTGATCACATTATCCGATCGTCTCAGCCCCTCTCAAATAATCATTGCAAGTATTTGATGTATCAGTTGCTTTCCGGCTTACAGTATCTTCATTCAACCAACATTCTTCATCGGGACTTGAAGCCCGGAAACCTCCTCGTCAATGCTAATTGTGATATGAAGATTTGTGATTTCGGGTTAGCACGAACGAGCAAAGACAAGGACCAAGTCATGACTGAGTACGTTGTTACTCGCTGGTATCGTGCACCAGAGCTTCTCCTATCATGTGACTATGGTACTTCCATTGATGTGTGGTCTGTGGGATGCATCTTTGCTGAGATTTTGGATTGCCTCAACCAACTAGAGTTAATCATCGAAGTTCTCGGTAGTCCAAAGGAAGCAGATATTGAGTTTATTGATAACCTAAAGTCCATAAAATTTATCAAATCTATGCCTTTCTCAACAAAAAGGATACAATTTTCAGATCAATATCCACAAGCTGAACCTTTAGCTTTGGACTTGCTGCAAAAGATGCTTGTGTTTGACCCGAGGAAGAGAATTACTGCTAATGAAGCACTTCAACATCCATACATGTCCGAGCTATACGACACAAAATTCAATTCTACTGATGAGGTTCCCCTCAATCTCGACATTGACGAATCACTTGATGAGCATGAGATCAGAGAAATGATATTGACTGAGATGCTCTATTATCATCCTGAAGCTGCTCCAACGTAG 1074 41.81 MATPVQPPKGFTSAGKHYYSMWQTLFEIDTKYVPIKPIGRGSYGVVCSSTNQQTNEKVAIKKIKNVFENRFEALRTLREMKLLRHIRHENVIALKDVMMPAHRNSFKDVYLVYELMNTDLDHIIRSSQPLSNNHCKYLMYQLLSGLQYLHSTNILHRDLKPGNLLVNANCDMKICDFGLARTSKDKDQVMTEYVVTRWYRAPELLLSCDYGTSIDVWSVGCIFAEILDCLNQLELIIEVLGSPKEADIEFIDNLKSIKFIKSMPFSTKRIQFSDQYPQAEPLALDLLQKMLVFDPRKRITANEALQHPYMSELYDTKFNSTDEVPLNLDIDESLDEHEIREMILTEMLYYHPEAAPT 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4076909 4078195 - CmoCh04G008190.1 Cmo04g00819 379794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00819 357 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 355 - -
Cmo04g00819 357 SUPERFAMILY Protein kinase-like (PK-like) 24 315 IPR011009 -
Cmo04g00819 357 Gene3D Transferase(Phosphotransferase) domain 1 116 336 - -
Cmo04g00819 357 SMART serkin_6 32 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00819 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Cmo04g00819 357 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 11 355 - -
Cmo04g00819 357 ProSitePatterns Protein kinases ATP-binding region signature. 38 62 IPR017441 GO:0005524
Cmo04g00819 357 ProSitePatterns MAP kinase signature. 67 170 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo04g00819 357 ProSiteProfiles Protein kinase domain profile. 32 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00819 357 Pfam Protein kinase domain 33 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00819 357 Gene3D Phosphorylase Kinase; domain 1 19 344 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00816 Cmo-Chr4:4066522 Cmo04g00819 Cmo-Chr4:4076909 0 dispersed
Cmo04g00819 Cmo-Chr4:4076909 Cmo16g00687 Cmo-Chr16:3402841 0 dispersed
Cmo04g00817 Cmo-Chr4:4071702 Cmo04g00819 Cmo-Chr4:4076909 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74250 PF00069 Pkinase 4.00E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00819 K20537 K20535 csv:101203896 576.244