Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00822 | ATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACCACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATTTGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGAGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGTGTACCAGAGATGCCTCAAAGTGCAATTCAATGTGTCTGTAGGTAGCAGATTTCAGAGCTTTTCAATTCCAAAATCTTCAAGATCTTTCAAATTTGGGCTTGTGGGCGGCGGAAGAGTCGTCGCCGGCAGTGGATACGTCTTGGTCGTTCACACGATCTTTCTTCACCAAAATTGTTCCGATAGGAAGCATCTTATAACTCTGGAAATGGGATCAAGTAATGACCCTGAGAATCAAATGATGATAGAAGGAAATGTTGTTCAGAAAATGAAAATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTGATCTTGGACTTTGCAGGCCCCAATTTTGTTTGCGTGGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACACAGACAAGTGTTGCATCTCAACTCATAGAAGTGAGGATGAATTCAGGGAAGTTGATAATGGTAGAGAAATATCAACATGGGATGATGCACTGCGGAGGAGCACTCAAGAATTCCAACACCGAGCCTACAATCTCTTAACTTGCAATTGTCATTCCTTTGTTGCTAACAATCTGAACAGACTTGGGTTTGTCACAGGTGGATGGAATGTGGTAAACCTTGCTGCTCTGATGTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTGATCCGGACGTTCTTACCATTTGGTGTGGTATTCAGTATAGGAGTTGCAATGGTGGGTACTACATTCCTAACTTTCTTGGCATTCTTCACTTTCTTCCTGGTTGGTTGGTTCGTTCTTGGTACTTATGTCTTCAAAAATTTGGTTCAGTTGGTGCAGAGGAAGAGTGGGGAGTGGCGTTATAAGGCGTGGCCGGTCCACTTCGTCCCTTTCGTCAACATCATCGTCACATTTCGCATTAACTCTTTTCCTCCCTTTCTCTCTGCCATTGCGGAGCCAAACCCAAGCATGACCAGCTCCTCCGACTCCGCTCGTAAGGCTTTAAGTAAGATTGCTTGCAATCGGCTTCAGAAGGAACTGGTCGAGTGGCAGGTTAACCCTCCCGCTGGTTTTAAACACAAGGTTACCGATAATCTCCAGAGATGGGTGATTGAAGTCAACGGAGCTCCGGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCCCCTCTTCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGATATTTTATATGATTCATGGTCGCCTGCAATGACTGTAAGTTCTATCTGTATCAGCATTCTCTCCATGTTGTCGAGCTCGACAGCAAAGCAACGCCCTGACGATAACGACCGTTATGTAAAGAATTGTAGGAATGGAAGATCCCCGAAAGAGACGAGGTGGTGGTTCCATGACGATAAGGTGTAA | 2274 | 48.64 | MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALLDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSRFQSFSIPKSSRSFKFGLVGGGRVVAGSGYVLVVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQLVQRKSGEWRYKAWPVHFVPFVNIIVTFRINSFPPFLSAIAEPNPSMTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV | 757 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4086461 | 4098063 | - | CmoCh04G008220.1 | Cmo04g00822 | 379797 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00822 | 757 | TIGRFAM | put_zinc_LRP1: putative zinc finger domain, LRP1 type | 81 | 123 | IPR006510 | - | |
Cmo04g00822 | 757 | MobiDBLite | consensus disorder prediction | 194 | 220 | - | - | |
Cmo04g00822 | 757 | SUPERFAMILY | UBC-like | 602 | 737 | IPR016135 | - | |
Cmo04g00822 | 757 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 611 | 757 | IPR000608 | - | |
Cmo04g00822 | 757 | TIGRFAM | LRP1_Cterm: LRP1 C-terminal domain | 153 | 200 | IPR006511 | - | |
Cmo04g00822 | 757 | MobiDBLite | consensus disorder prediction | 127 | 146 | - | - | |
Cmo04g00822 | 757 | ProSitePatterns | Ubiquitin-conjugating (UBC) active site signature. | 684 | 699 | IPR023313 | - | |
Cmo04g00822 | 757 | Gene3D | Ubiquitin Conjugating Enzyme | 611 | 757 | IPR016135 | - | |
Cmo04g00822 | 757 | CDD | UBCc | 613 | 713 | IPR000608 | - | |
Cmo04g00822 | 757 | SMART | ubc_7 | 614 | 757 | - | - | |
Cmo04g00822 | 757 | Pfam | Protein of unknown function (DUF778) | 421 | 495 | IPR008496 | - | |
Cmo04g00822 | 757 | Pfam | Protein of unknown function (DUF778) | 364 | 413 | IPR008496 | - | |
Cmo04g00822 | 757 | Pfam | Ubiquitin-conjugating enzyme | 615 | 750 | IPR000608 | - | |
Cmo04g00822 | 757 | PANTHER | UNCHARACTERIZED | 302 | 551 | IPR008496 | - | |
Cmo04g00822 | 757 | PANTHER | - | 302 | 551 | - | - | |
Cmo04g00822 | 757 | Pfam | Domain of unknown function (DUF702) | 80 | 201 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g01772 | Cmo-Chr1:13111731 | Cmo04g00822 | Cmo-Chr4:4086461 | 2.45E-53 | dispersed | |
Cmo04g00822 | Cmo-Chr4:4086461 | Cmo16g00699 | Cmo-Chr16:3464046 | 1.48E-108 | dispersed | |
Cmo16g00696 | Cmo-Chr16:3451052 | Cmo04g00822 | Cmo-Chr4:4086461 | 2.00E-130 | transposed | |
Cmo16g00693 | Cmo-Chr16:3422327 | Cmo04g00822 | Cmo-Chr4:4086461 | 1.08E-113 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9565 | PF00179 | UQ_con | 1.10E-36 | CL0208 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00822 | - | - | csv:101222733 | 416.387 |