Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00822 ATGGCCGGTTTTTTCCCACTAGGCGGCGGAAGAGAACCCAATTATCACCTTCCCACCACCACCACCACCACCACGGACGGATTATTTTGGTACAGAAATTATGAGAGCCTTGGAATTTGGCAGCAACAGCAGGTGCAGCAGCAAGCGGGAGAAGGGTTTGTTTACTCGGGCGATGAATCGCCTCCAAGATCGTCGTTGGTGATGCTGAGATCCGGCAGAAACGGGGGAGGGCAAGTAATAAGCTGCCAAGATTGTGGAAATCAAGCCAAAAAGGATTGCCTTCACATGCGATGTAGAACTTGCTGTAAAAGTCGTGGCTTTGACTGTGAAACCCACGTCAAAAGTACTTGGGTTCCGGCCTCCAAACGCCGTGAGCGACACCTCCGCAGCGACGGCACTAATCTCAAACGACCTCGAGACAACACCGCCGCTTCCTCAGGGTTAGAAATGAGGAATTTTCCGGTGGAAGTGAGCTCAACGGCGGTGTTTCGGTGCGTGCGAATGACAACGTTGGACGAAACCAACGACCAATTTGCTTACCAAACAGCCGTCAACATCGGAGGCCATACCTTCAAGGGCATTCTTTACGACCACGGCCCTGAACAACAACAACAACCACCACCACCACCACCCAACTCCGCCTCCCCCGACGGTGGCGCCCTCCTCATCACCGCCCCCTCCACCACCATGGAATTGCCACCCATCAGCGCCGCATTGCTCGATCCTCCTCCGCCGTACCCAGCTCCTCTGAACACCTACGTCGCCGCCGTGTACCAGAGATGCCTCAAAGTGCAATTCAATGTGTCTGTAGGTAGCAGATTTCAGAGCTTTTCAATTCCAAAATCTTCAAGATCTTTCAAATTTGGGCTTGTGGGCGGCGGAAGAGTCGTCGCCGGCAGTGGATACGTCTTGGTCGTTCACACGATCTTTCTTCACCAAAATTGTTCCGATAGGAAGCATCTTATAACTCTGGAAATGGGATCAAGTAATGACCCTGAGAATCAAATGATGATAGAAGGAAATGTTGTTCAGAAAATGAAAATTGATCCGGAGAGAGCTCGGTTTCCATGTTGCATTGTGTGGACACCTCTTCCTGTTATTTCCTGGCTCATTCCTTTCATTGGTCACATTGGTATTGGCAGAGAGGATGGAGTGATCTTGGACTTTGCAGGCCCCAATTTTGTTTGCGTGGACAACTTCACATTTGGAGCAGTCGCACGGTATCTTCAAATCAACACAGACAAGTGTTGCATCTCAACTCATAGAAGTGAGGATGAATTCAGGGAAGTTGATAATGGTAGAGAAATATCAACATGGGATGATGCACTGCGGAGGAGCACTCAAGAATTCCAACACCGAGCCTACAATCTCTTAACTTGCAATTGTCATTCCTTTGTTGCTAACAATCTGAACAGACTTGGGTTTGTCACAGGTGGATGGAATGTGGTAAACCTTGCTGCTCTGATGTTTCTCAAGGGTCGGTGGGTCAGTAAAGGAGCTGTGATCCGGACGTTCTTACCATTTGGTGTGGTATTCAGTATAGGAGTTGCAATGGTGGGTACTACATTCCTAACTTTCTTGGCATTCTTCACTTTCTTCCTGGTTGGTTGGTTCGTTCTTGGTACTTATGTCTTCAAAAATTTGGTTCAGTTGGTGCAGAGGAAGAGTGGGGAGTGGCGTTATAAGGCGTGGCCGGTCCACTTCGTCCCTTTCGTCAACATCATCGTCACATTTCGCATTAACTCTTTTCCTCCCTTTCTCTCTGCCATTGCGGAGCCAAACCCAAGCATGACCAGCTCCTCCGACTCCGCTCGTAAGGCTTTAAGTAAGATTGCTTGCAATCGGCTTCAGAAGGAACTGGTCGAGTGGCAGGTTAACCCTCCCGCTGGTTTTAAACACAAGGTTACCGATAATCTCCAGAGATGGGTGATTGAAGTCAACGGAGCTCCGGGAACTCTCTATGCAAATGAAACCTACCAGCTTCAGGTGGACTTCCCTGAGCATTACCCAATGGAAGCCCCACAGGTTATATTTCTGCATCCAGCCCCTCTTCATCCTCATATCTATAGCAATGGTCACATTTGTCTAGATATTTTATATGATTCATGGTCGCCTGCAATGACTGTAAGTTCTATCTGTATCAGCATTCTCTCCATGTTGTCGAGCTCGACAGCAAAGCAACGCCCTGACGATAACGACCGTTATGTAAAGAATTGTAGGAATGGAAGATCCCCGAAAGAGACGAGGTGGTGGTTCCATGACGATAAGGTGTAA 2274 48.64 MAGFFPLGGGREPNYHLPTTTTTTTDGLFWYRNYESLGIWQQQQVQQQAGEGFVYSGDESPPRSSLVMLRSGRNGGGQVISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAASSGLEMRNFPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQQQPPPPPPNSASPDGGALLITAPSTTMELPPISAALLDPPPPYPAPLNTYVAAVYQRCLKVQFNVSVGSRFQSFSIPKSSRSFKFGLVGGGRVVAGSGYVLVVHTIFLHQNCSDRKHLITLEMGSSNDPENQMMIEGNVVQKMKIDPERARFPCCIVWTPLPVISWLIPFIGHIGIGREDGVILDFAGPNFVCVDNFTFGAVARYLQINTDKCCISTHRSEDEFREVDNGREISTWDDALRRSTQEFQHRAYNLLTCNCHSFVANNLNRLGFVTGGWNVVNLAALMFLKGRWVSKGAVIRTFLPFGVVFSIGVAMVGTTFLTFLAFFTFFLVGWFVLGTYVFKNLVQLVQRKSGEWRYKAWPVHFVPFVNIIVTFRINSFPPFLSAIAEPNPSMTSSSDSARKALSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYANETYQLQVDFPEHYPMEAPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTAKQRPDDNDRYVKNCRNGRSPKETRWWFHDDKV 757
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4086461 4098063 - CmoCh04G008220.1 Cmo04g00822 379797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00822 757 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 81 123 IPR006510 -
Cmo04g00822 757 MobiDBLite consensus disorder prediction 194 220 - -
Cmo04g00822 757 SUPERFAMILY UBC-like 602 737 IPR016135 -
Cmo04g00822 757 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 611 757 IPR000608 -
Cmo04g00822 757 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 153 200 IPR006511 -
Cmo04g00822 757 MobiDBLite consensus disorder prediction 127 146 - -
Cmo04g00822 757 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 684 699 IPR023313 -
Cmo04g00822 757 Gene3D Ubiquitin Conjugating Enzyme 611 757 IPR016135 -
Cmo04g00822 757 CDD UBCc 613 713 IPR000608 -
Cmo04g00822 757 SMART ubc_7 614 757 - -
Cmo04g00822 757 Pfam Protein of unknown function (DUF778) 421 495 IPR008496 -
Cmo04g00822 757 Pfam Protein of unknown function (DUF778) 364 413 IPR008496 -
Cmo04g00822 757 Pfam Ubiquitin-conjugating enzyme 615 750 IPR000608 -
Cmo04g00822 757 PANTHER UNCHARACTERIZED 302 551 IPR008496 -
Cmo04g00822 757 PANTHER - 302 551 - -
Cmo04g00822 757 Pfam Domain of unknown function (DUF702) 80 201 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01772 Cmo-Chr1:13111731 Cmo04g00822 Cmo-Chr4:4086461 2.45E-53 dispersed
Cmo04g00822 Cmo-Chr4:4086461 Cmo16g00699 Cmo-Chr16:3464046 1.48E-108 dispersed
Cmo16g00696 Cmo-Chr16:3451052 Cmo04g00822 Cmo-Chr4:4086461 2.00E-130 transposed
Cmo16g00693 Cmo-Chr16:3422327 Cmo04g00822 Cmo-Chr4:4086461 1.08E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9565 PF00179 UQ_con 1.10E-36 CL0208 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00822 - - csv:101222733 416.387