Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00828 ATGAACCAGCAAGAAAGTGAAGAGCGTGAAGCAGTACAAATCTGTGAGTTGTACACTCCATTATACATCCAAATGGTTCCCCAACAACAAGATAATAATTTGGGTGAAGCAAAACGGAGACGACGTCGTAAGAAGAACAGAGGATCGGAAGCGGATGCGGTGGCAAAGAAGAGGAAGCTCACAGCCGCGCAGGTTCATCTTTTGGAGACTAATTTTGGAAGTGAACATAAGTTGGAGTCGGAAAGAAAGGACCGTCTGGCGTCGGAGTTGGGGCTCGATCCTCGCCAGGTCGCCGTCTGGTTTCAGAACCGCCGTGCCCGCTGGAAGAACAAGAAACTTGAGGAGGAATATTCTAGCTTGAAGAAGCTTCATGAATCCGTCGTCGTTGAAAAATGCCGTCTTGAAACTCAGATACTGAAGCTGAAAGAACAACTTTCAGAAGCGGAGAAAGAAAAGGAGAGGTTGATAATGGGAGAACGGGGCGATGGGCCTTTAAGCAGCAGCAGCCCAAGCCCATCGATGTCAATGGACGCCGTGGACCCCACAGGCCTCGGGGAATTTGGAGCATCATTCGAAGATGTGTTTTACTACATGCCTGAAAACTCTTGCATTTATGGCATGGAATGGCCCAATCCCTACATTTGA 645 48.37 MNQQESEEREAVQICELYTPLYIQMVPQQQDNNLGEAKRRRRRKKNRGSEADAVAKKRKLTAAQVHLLETNFGSEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSSLKKLHESVVVEKCRLETQILKLKEQLSEAEKEKERLIMGERGDGPLSSSSPSPSMSMDAVDPTGLGEFGASFEDVFYYMPENSCIYGMEWPNPYI 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4132503 4134035 + CmoCh04G008280.1 Cmo04g00828 379803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00828 214 Coils Coil 103 158 - -
Cmo04g00828 214 PRINTS Lambda-repressor HTH signature 82 91 IPR000047 GO:0003677
Cmo04g00828 214 PRINTS Lambda-repressor HTH signature 91 107 IPR000047 GO:0003677
Cmo04g00828 214 Pfam Homeodomain 56 110 IPR001356 GO:0003677
Cmo04g00828 214 CDD homeodomain 56 112 IPR001356 GO:0003677
Cmo04g00828 214 ProSitePatterns 'Homeobox' domain signature. 86 109 IPR017970 GO:0000981|GO:0006355
Cmo04g00828 214 ProSiteProfiles 'Homeobox' domain profile. 51 111 IPR001356 GO:0003677
Cmo04g00828 214 Gene3D - 48 120 - -
Cmo04g00828 214 SMART HOX_1 54 115 IPR001356 GO:0003677
Cmo04g00828 214 MobiDBLite consensus disorder prediction 158 179 - -
Cmo04g00828 214 MobiDBLite consensus disorder prediction 29 54 - -
Cmo04g00828 214 SUPERFAMILY Homeodomain-like 56 119 IPR009057 -
Cmo04g00828 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 11 213 - -
Cmo04g00828 214 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 213 IPR045224 GO:0003700
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00828 K09338 HD-ZIP; homeobox-leucine zipper protein - csv:101221080 310.071
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo03g00798 Cmo04g00828 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00828 Cmo-Chr4:4132503 Cmo04g02845 Cmo-Chr4:20319544 9.85E-27 dispersed
Cmo03g00798 Cmo-Chr3:6497862 Cmo04g00828 Cmo-Chr4:4132503 1.15E-48 wgd
Cmo04g00828 Cmo-Chr4:4132503 Cmo07g00502 Cmo-Chr7:2267677 2.52E-25 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g927 Blo04g00927 Blo16g00037 Bda04g00064 . . Bpe13g00454 . . Cmo04g00828 . Cma03g00769 Cma07g00504 . Car07g00441 Sed07g1686 Cpe19g00797 . Bhi03g01269 Tan03g1958 Cmetu07g2129 . Hepe04g1489 . . Cla01g01886 Cam01g1978 Cec04g1629 Cco04g1694 Clacu01g1998 Cmu01g1868 Cre04g1550 Cone8ag0797 Cone12ag0756 . Cone9ag1531 Lsi01g00699 . Chy07g01276 Cme08g00826 . Blo06g00125 Bda11g01876 . Bpe10g00106 Bpe06g00054 . Bma06g00130 . Cmo03g00798 . . . . . . . . . . . . . . Cla07g00851 Cam07g0923 Cec07g0983 Cco07g0966 Clacu07g0899 Cmu07g0899 Cre07g1264 . Csa06g03219 Chy02g00668 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002434 2 1 3 1 3 2 2 2 2 2 2 2 3 2 2 1 2 3 3 2 2 2 2 2 2 1 2 3 2 1 61
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9567 PF00046 Homeodomain 6.60E-17 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00828 Cmo_Chr04 FPKM 5.358441 5.663378 14.781911 15.412617 135.055115 147.483444 119.569016 11.7637 12.407613 13.222137