Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00829 ATGGNCACCATCGCCATCGCCCCCCCCCCTCCCACCCCCACCTCCACCCCCAATATTACCAACCCCTCTTACGAACCCACCTCCGTCCTCGACCTCCGCCGCAGCCCCAGCCCTGTGGCGCCTGACCCACACACCCTCTCCTCCGCTCCACTCCTCCCCACTGACGATCGTCCCAACAACAACAACAACAACAACAACCCTTCTCTGGACTGGGATGAACAGACCCTCCACAACCTCGACTGGGACTCCATCATGGGAGATTTGGGCTTACACGATGACTCCAACTCTGCTCCCAAAAACCCAAACCCAAACCCCAATCCCAATCCCAATCCCAATCCCAACAACAATAATCATGTTCCTCAATTCCCTGATTTCCTCCACTCCCACCCCTTCGATCATCAAACCCATCTGGTTTCCCCTGATTTCTTCCTCTCTGAACCCCCCTATTCCAACCACACCCCCACCTTCAATTCCTTCGATTTGGCGGCTCCCAATTCCAACAACTTCTCCTGCGAATTCCTTGAAGACATAGTCCGCACCGCTGATTGTTTCGACTCCAATGACTTCCAACTCGCCCACGTCATATTGGAGCGCCTCAATCAACGCCTTCAATCCTCCACCGGAAAGCCCCTTCAGCGGGCCGCCTTCTTCTTCAAAGAGGCTCTTCAATCTCTCCTCTCCGCCTCCAACCGCCACAATCGCCTCTCCTCCTGGCCCGAAATTGTTCATACAATCAGGGCTTACAAGGTCTTCTCTGCAATTTCTCCAATTCCCATGTTCTCCCACTTCACTACCAATCAGGCGCTTCTTGAAGCTCTTAACGGCTCGTCTTTCATTCATATTGTTGATTTTGATATTGGGTTTGGAGGGCAGTACGCGTCTTTCATGAAGGAGATTGCAGAGAAGGCAGAGTCCAGGAAGATGATTCCACCGGTGCTTCGGATAACGGCGGTGGTGCCGGAGGAATTTGCGATTGAGAGTAGGTTGATTAGGGAGAATCTGTGTCAGTTCGCTCAGGATCTGAAGATTCGGTTTCATATAGATCTGGTGCCGCTTCGGACCTTCGAGACGTTGTCCTTCAAATCGGTGAAGTTCATGGAAGGGGAGAAGGCCGCGATTTTATTAACGCCCGCGATCTTCCGCCGTCTTGGGAGTATAAACAGTATAGGGTCTTTTCTCTCCGACGTGCGACTGGTGTCGCCCTGCGTCGTCGTGTTCGTTGACGGTGAAGGGTGGTCGGACTCCGGCGCGGCGTCGTTCAAGAGGAATTTGGTAGATAGCCTGGAGTTCTACGCCATGATGCTAGAGTCGCTGGACGCAGCGGTGGCTGGCGGGGACTGGGTGCGGAGGATAGAGACGTTTGTGTTCCGGCCGAAGATATTGGCTGCGGTGGAAGGAGCAGGGAGAATGGCAGCGCCGCCGTGGAGGGAGGTATTCCACGGCGCCGGGATGAGGCCAGTGGCACTGAGCCAGTTTGCAGATTTTCAGGCGGAGTGCTTACTTGGAAAAGTACAGGTTCAAGGGTTCCAAGTAGGAAAACGGCATGCTGAGCTGGTGCTGTGCTGGCACGAGAGGCCTCTGGTTGCCACGTCGGCGTGGAGGTGTTAA 1608 54.54 MXTIAIAPPPPTPTSTPNITNPSYEPTSVLDLRRSPSPVAPDPHTLSSAPLLPTDDRPNNNNNNNNPSLDWDEQTLHNLDWDSIMGDLGLHDDSNSAPKNPNPNPNPNPNPNPNNNNHVPQFPDFLHSHPFDHQTHLVSPDFFLSEPPYSNHTPTFNSFDLAAPNSNNFSCEFLEDIVRTADCFDSNDFQLAHVILERLNQRLQSSTGKPLQRAAFFFKEALQSLLSASNRHNRLSSWPEIVHTIRAYKVFSAISPIPMFSHFTTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESRKMIPPVLRITAVVPEEFAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFETLSFKSVKFMEGEKAAILLTPAIFRRLGSINSIGSFLSDVRLVSPCVVVFVDGEGWSDSGAASFKRNLVDSLEFYAMMLESLDAAVAGGDWVRRIETFVFRPKILAAVEGAGRMAAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVQGFQVGKRHAELVLCWHERPLVATSAWRC 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4135304 4136911 - CmoCh04G008290.1 Cmo04g00829 379804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00829 535 MobiDBLite consensus disorder prediction 52 73 - -
Cmo04g00829 535 Pfam GRAS domain family 176 534 IPR005202 -
Cmo04g00829 535 MobiDBLite consensus disorder prediction 1 132 - -
Cmo04g00829 535 MobiDBLite consensus disorder prediction 100 116 - -
Cmo04g00829 535 PANTHER SCARECROW-LIKE PROTEIN 15 16 534 - -
Cmo04g00829 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 534 IPR005202 -
Cmo04g00829 535 MobiDBLite consensus disorder prediction 1 17 - -
Cmo04g00829 535 ProSiteProfiles GRAS family profile. 164 534 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00829 Cmo-Chr4:4135304 Cmo17g00454 Cmo-Chr17:3141301 5.71E-70 dispersed
Cmo16g00706 Cmo-Chr16:3517368 Cmo04g00829 Cmo-Chr4:4135304 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9568 PF03514 GRAS 4.30E-89 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00829 - - cpep:111811752 993.416