Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00834 ATGATGATGGCAAAGCAATTCAGACTTCTCCGAATCCCTTCCTTCCAGTGTTGCCGTTCCAGCGACATCTCCGTCGTCCCCACTGACCCACCACCTCCCCCCTCGCCCTCATCAAAACCCCACCATTATTCCTCACTCCGGCGCCACGTTTCCTCCGCCTTCAGAACTGCCGCCTGCGGCAGGAGATCACTCTCTACCAACTCTGACGATGACCAAATTACCCAATCATCCCCAAAACTTCCCCGGCACGTGCCACCCACGCCCCTCCCTGAATCATACGACGACGCCTTGCCTCTGCCGAAGCAACAACGACGCAGGAAGAAGAAATCGAAATCAACCACACTCGCACGGCTTCGAATCAGCACCTCTTCGACAGAGAGCGGGCTATTCAGCAGCGAATCGTTCGACGAAATAGACGAATTAGAAGAAACCGAAACCCTAATTTCTTCATCCAAAACGATCTCCACTACCGACGACGACGATTCCTCCTCCGAATTCAATCCTCAATTGGAAACCATACGCGAGAAGCCGTACAAAGGCAGGAACAAGATCAATTTGAAGAATAAGAAGAAGAAGAAGGAGAAGCGGCATCGTAGCAGTAATCGACGGCAGAAACCAAGGAGGATGATCAAGACATCGCCGTCGCCAGAAAGCGAGTCGCCAGCGAGGCTTTCGGTGTTCCAGAGGCTGATACCATGCACAGTGGACGGGAAGATCAGAGAGAGCTTCGCGGTGGTGAAGAAATCGGAAGATCCGTTCGAGGATTTCAAGAGATCGATGATGGAGATGATAATGGAGAAGGAGATGTTCGATGAGAAGGATTTGGAGCAGCTTCTTCACTGTTTGTTGTCATTGAATGATAGAGAACACCATGGAATTATAGTGGAAGCTTTTTCTGAGATTTGGCAGTCCTTGTTCTGTAACAAATCGACAAGTCGGACAAGCTTCTGA 951 50.37 MMMAKQFRLLRIPSFQCCRSSDISVVPTDPPPPPSPSSKPHHYSSLRRHVSSAFRTAACGRRSLSTNSDDDQITQSSPKLPRHVPPTPLPESYDDALPLPKQQRRRKKKSKSTTLARLRISTSSTESGLFSSESFDEIDELEETETLISSSKTISTTDDDDSSSEFNPQLETIREKPYKGRNKINLKNKKKKKEKRHRSSNRRQKPRRMIKTSPSPESESPARLSVFQRLIPCTVDGKIRESFAVVKKSEDPFEDFKRSMMEMIMEKEMFDEKDLEQLLHCLLSLNDREHHGIIVEAFSEIWQSLFCNKSTSRTSF 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4155392 4156342 - CmoCh04G008340.1 Cmo04g00834 379809

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00834 316 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 77 309 IPR038933 GO:0045892
Cmo04g00834 316 MobiDBLite consensus disorder prediction 183 209 - -
Cmo04g00834 316 MobiDBLite consensus disorder prediction 23 223 - -
Cmo04g00834 316 MobiDBLite consensus disorder prediction 147 170 - -
Cmo04g00834 316 MobiDBLite consensus disorder prediction 58 80 - -
Cmo04g00834 316 PANTHER TRANSCRIPTION REPRESSOR OFP7 77 309 - -
Cmo04g00834 316 Pfam Transcriptional repressor, ovate 249 306 IPR006458 -
Cmo04g00834 316 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 243 306 IPR006458 -
Cmo04g00834 316 MobiDBLite consensus disorder prediction 115 132 - -
Cmo04g00834 316 ProSiteProfiles OVATE domain profile. 245 304 IPR006458 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00834 - - - cmax:111480920 460.299
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00834 Cmo-Chr4:4155392 Cmo11g00615 Cmo-Chr11:2945677 8.61E-26 dispersed
Cmo04g00834 Cmo-Chr4:4155392 Cmo10g00654 Cmo-Chr10:3008120 4.43E-26 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g945 Blo04g00923 Blo16g00038 . . . . . . Cmo04g00834 . . . . . . . . . . . . . . . . . . . . . . Cone8ag0800 Cone12ag0753 . . . . Chy07g01287 . . . . . . . Bma03g00994 . . . . . . . . . . . . . . . . . Cla07g00862 Cam07g0934 Cec07g0999 Cco07g0977 Clacu07g0908 Cmu07g0908 Cre07g1276 Lsi07g00211 Csa04g00514 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011669 1 0 2 1 0 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 0 2 1 1 1 1 1 1 2 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9569 PF04844 Ovate 2.50E-24 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00834 Cmo_Chr04 FPKM 5.562249 5.275701 25.246391 27.996401 64.241211 66.050362 63.421032 8.223917 7.057712 6.818344