Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00835 ATGGGCATCCAGGACGTGATAAAGACGGACGTACTTCGTTTCGTCCCAGCCAAATCCCTGTGCAGATTCAAATCCGTCTCGAAAGACTGGAACCAATGGATCTCTTCTCCCTTCCTCGCCCACCAGCAAGCCATTCACTTCAACAAAATCTCCGGCTTCTTCTCCCAATCCAACAGCCAAGACTGCTTCTTCATCCCTCTCGACCCTCACTCCCATGGCGTCCCATTCCCTTCCCTTTCCTTCCTCCCTGAATCCACTTCCATCCGAACCACTTCCAACGGCCTCCTCTGCTGCCAAAGCACTTTCCAGGACAGCATCTATTTCATATGCAACCCCACTACTATGGAATGGAGACAGCTCCCCGAGCCCTCTCTGTTTCATGGAGATGTCTCTGCCATTGCCCTTGCTTTCACTCCCTCCACTTTCAACTTTGAATCCCACTTCCAGATTGTCTGTGCTGTCCCCTTTCATTCCGTTAGAGCTGTTTACTTTGAGATCTACTCTTCTAGGACCAACACTTGGAAAATTTCTGACTCCCAATACTTCTATGCTGGCGATGGCGATTTGATGTTCAAAGGGGACGGATTTTGTATTGGTGATACCGTGTACTGGGAGACGTCAAACGGCATCATTCTGGGGTTTGATTTGAAATATGAAGTATATGGGGAGATTCAGCTCCCTCTCCCTCCCGGCCATGGGGCTATAACGGAGATCCGTGGAGAGATGTGCTATGCTATGGTAATAACTTGTAACAGTGAGAATGATGAAGCGGGTGCTTATTCGCTTGGCATTTATGTTGGTCATGACATGGTGTTGAAGCATCGATTTCCTCTCGATGTTGGGAGTTATTTGGGAGAGGATTTTGATGGAGAGGTTAGAGTATTATCGTGTGTAAGTGATGGCATGGCGATGATTCTTGTAGGGAGCAATGTGATTCTGTATGATGTGGAAAAAAGGAAAGGGGAGGTTGTGAAAAAATTAGTCGATCCGCCAGATCGTGCCAATGCCAGTATCAGTGCCAGTGCGGGGCGGTTTCTGCCGTACGTGAATAGCCTTGTGAGGGTGTGTCCGGTGGAGAGGATGCCGCCGGAGGATCATGATTTACAAGAAATTTTGAGAAACACGAGTGAGTTGGTTGGGTTTGGTGAAGTTTCTTTCTGTGGAAATAAGTGGATAGGACCGACTATATAG 1191 48.03 MGIQDVIKTDVLRFVPAKSLCRFKSVSKDWNQWISSPFLAHQQAIHFNKISGFFSQSNSQDCFFIPLDPHSHGVPFPSLSFLPESTSIRTTSNGLLCCQSTFQDSIYFICNPTTMEWRQLPEPSLFHGDVSAIALAFTPSTFNFESHFQIVCAVPFHSVRAVYFEIYSSRTNTWKISDSQYFYAGDGDLMFKGDGFCIGDTVYWETSNGIILGFDLKYEVYGEIQLPLPPGHGAITEIRGEMCYAMVITCNSENDEAGAYSLGIYVGHDMVLKHRFPLDVGSYLGEDFDGEVRVLSCVSDGMAMILVGSNVILYDVEKRKGEVVKKLVDPPDRANASISASAGRFLPYVNSLVRVCPVERMPPEDHDLQEILRNTSELVGFGEVSFCGNKWIGPTI 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4159025 4160215 + CmoCh04G008350.1 Cmo04g00835 379810

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00835 396 PANTHER F-BOX DOMAIN-CONTAINING PROTEIN-RELATED 1 355 - -
Cmo04g00835 396 Pfam F-box domain 10 37 IPR001810 GO:0005515
Cmo04g00835 396 SUPERFAMILY F-box domain 9 49 IPR036047 GO:0005515
Cmo04g00835 396 PANTHER F-BOX PROTEIN INTERACTION DOMAIN PROTEIN-RELATED 1 355 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00835 - - - cmos:111447708 822.772
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01765 Cmo-Chr2:10089352 Cmo04g00835 Cmo-Chr4:4159025 2.18E-08 dispersed
Cmo04g00835 Cmo-Chr4:4159025 Cmo10g00506 Cmo-Chr10:2269712 4.42E-23 dispersed
Cmo04g00835 Cmo-Chr4:4159025 Cmo15g01418 Cmo-Chr15:9669296 6.24E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g951 . . . . . . . . Cmo04g00835 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1614 Cone9ag1540 . . Chy07g01289 . . . . . . . . . . . . . . . . . . . . . . . . . Cla07g00863 Cam07g0936 Cec07g1002 Cco07g0979 Clacu07g0909 Cmu07g0909 Cre07g1279 Lsi07g00209 Csa04g00512 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013669 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 0 1 1 1 1 1 1 1 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00835 Cmo_Chr04 FPKM 82.083389 87.007294 42.86005 43.718407 99.588188 113.935165 102.237396 44.074802 42.237591 39.874382