Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00836 | ATGTCGTACTATAGTGGAGATAATGCGAATGGACCTAAAGGTGGTAACTATTACAACGGTTCACAAAAACCAAATTGGCACAACAACAACGCAGGGGGGGGTCCGGGCGTGAACGGGTGGCCGCCCATGAGTAGTGAGAACATGACCACAAGCGGTAGTTTTACAGGGCCTCCTCTTCCTCCACCATCGCCATCCCTTGCGTTCGGGTTCAGCAAGAGCACGTTCACGTACGACGAGCTTGCAGCAGCAACAGGAGGGTTCGCGCACGGCAACTTACTTGGGCAGGGGGGGTTCGGATACGTGCACAAGGGGGTGTTGCCCAACGGGAAAGAGGTGGCGGTGAAGAGCCTCAAGGTGGGAAGCGGGCAGGGGGAGAGAGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCATCGGCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGGGGACAGAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGACCTCCCTGTAATGGATTGGCCAACCAGGCTTCGTATTGCCATAGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAAATTATTCATAGAGATATCAAGTCCGCTAATATTCTAATTGATGCCAACTTCGAGGCAATGGTGGCCGATTTTGGATTGGCTAAGTTGTCTTCGGATACTAACACCCATGTCTCCACCAGGGTTATGGGTACATTTGGGTATTTAGCACCCGAATATGCATCAAGTGGGAAGCTAACAGAGAAGTCTGACGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATTACTGGAAAACGACCGGTTGATCCTCATCATGTTATGGAGGATAGCTTAGTAGATTGGGCGCGAGCGATTATTAGCGGGGAAATGGGAGAAGATGTATACGAAGTGCTGGTGGATAAGCGATTAGGAAAGGAGTTCAATACTCAGGAGATGGGGCGCATGGTATCATGTGCTGCAGCCTCCATCCGTCACTCCGCTAGAAAACGCCCCAAAATGAGCCAAGTAGTACGAGCCCTGGAAGGGGATTATTCATTGGACGACCTAAACGACGGGATAAGACCAGGTCAAAGCTCAATTTACAGTGTGGCAGGGTCGGACTATGATTCAAATGCGTACCAAGCCGACATGTCGAGATTCAGGAAACTAGCTTTGGCACTAGAGCTTGTTCGATTTTCTGTTGCGCATTTGGTTCGTTCTTCTTCCAGATTTTCTTCTTTGTATTTGTTGAGTGGGCTGACAATGGCTGTCGAGGAGAAACCACGAGCTGATAATTCTGCAGAGTCCCCGACTTCGGTTCTAGAAAACGAGGATTTGTCTAATGGGGAAAATGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGTAAAAATTGGGGATTCCAGCTTTATATCAAAAGAGATGGCGGAAGAGGAGAAGAAATTGCTGGAAGCTCGGGTTAAGGAAGAGGAGGTCGAGAGACTTGAGGATTCAACAGAATCTCCAAACTTGAATGACAATCAATTTACCAAATTGGATGAACTTCTCACTCGAACACAGTTATACTCAGGATTTTTGCGGGAGAAAATGGATGACATCACAATTAATGGAGTGGAGGAGGACGAGAAATCTGTTGGGAAAAGTTGTGGGCGTGGTTCGAAGAGGAAAGCTTCTGCACGTTGTAATAATAGGAAGGCAAAAAGGGCTGTTGCAGCTATGCTGACTAGATTGAAAGATGGTGAGCGAGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATAGAAAAGGAGCAGAGTGAACTCGTACCTCTGTTGACTGGTGGTAAATTGAAGTCCTACCAACTCAAGGGTGTCAAATGGTTGATTTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACGATTGCCTTCCTTGCACATCTGAAAGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACTCTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACAGTGACTGCTATTGTATATCATGGTGACAAAAAACAAAGGGAAGAAATTCGAAGGAAGCACATGCCTAGAACAATTGGACCCAAATTCCCCATAGTGGTTACTTCGTATGAGATTGCAATGAGTGATGCTAAAAAGTTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATCGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAACTGTTGAAAATAAACTGCTGCTAAACTGGGACACCCCTGCAGAATAA | 2364 | 45.69 | MSYYSGDNANGPKGGNYYNGSQKPNWHNNNAGGGPGVNGWPPMSSENMTTSGSFTGPPLPPPSPSLAFGFSKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKDLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPHHVMEDSLVDWARAIISGEMGEDVYEVLVDKRLGKEFNTQEMGRMVSCAAASIRHSARKRPKMSQVVRALEGDYSLDDLNDGIRPGQSSIYSVAGSDYDSNAYQADMSRFRKLALALELVRFSVAHLVRSSSRFSSLYLLSGLTMAVEEKPRADNSAESPTSVLENEDLSNGENEIKLEEEIILEVKIGDSSFISKEMAEEEKKLLEARVKEEEVERLEDSTESPNLNDNQFTKLDELLTRTQLYSGFLREKMDDITINGVEEDEKSVGKSCGRGSKRKASARCNNRKAKRAVAAMLTRLKDGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTVTAIVYHGDKKQREEIRRKHMPRTIGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLNWDTPAE | 787 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4161753 | 4166266 | + | CmoCh04G008360.1 | Cmo04g00836 | 379811 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00836 | 787 | Pfam | Protein tyrosine and serine/threonine kinase | 90 | 359 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo04g00836 | 787 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 634 | 787 | IPR014001 | - | |
Cmo04g00836 | 787 | Pfam | SNF2-related domain | 625 | 780 | IPR000330 | GO:0005524|GO:0140658 | |
Cmo04g00836 | 787 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cmo04g00836 | 787 | MobiDBLite | consensus disorder prediction | 439 | 460 | - | - | |
Cmo04g00836 | 787 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 207 | 219 | IPR008271 | GO:0004672|GO:0006468 | |
Cmo04g00836 | 787 | SMART | serkin_6 | 87 | 364 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00836 | 787 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Cmo04g00836 | 787 | Gene3D | Transferase(Phosphotransferase) domain 1 | 163 | 369 | - | - | |
Cmo04g00836 | 787 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 9 | 410 | - | - | |
Cmo04g00836 | 787 | SMART | ultradead3 | 618 | 782 | IPR014001 | - | |
Cmo04g00836 | 787 | ProSitePatterns | Protein kinases ATP-binding region signature. | 93 | 115 | IPR017441 | GO:0005524 | |
Cmo04g00836 | 787 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 9 | 410 | - | - | |
Cmo04g00836 | 787 | Gene3D | Phosphorylase Kinase; domain 1 | 64 | 162 | - | - | |
Cmo04g00836 | 787 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 591 | 779 | IPR027417 | - | |
Cmo04g00836 | 787 | Gene3D | - | 592 | 785 | IPR038718 | - | |
Cmo04g00836 | 787 | Coils | Coil | 485 | 510 | - | - | |
Cmo04g00836 | 787 | CDD | STKc_IRAK | 93 | 361 | - | - | |
Cmo04g00836 | 787 | ProSiteProfiles | Protein kinase domain profile. | 87 | 365 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo04g00836 | 787 | SUPERFAMILY | Protein kinase-like (PK-like) | 60 | 359 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo04g00836 | Cmo-Chr4:4161753 | Cmo10g00657 | Cmo-Chr10:3018920 | 3.14E-180 | dispersed | |
Cmo18g01082 | Cmo-Chr18:11371917 | Cmo04g00836 | Cmo-Chr4:4161753 | 8.18E-130 | dispersed | |
Cmo16g00712 | Cmo-Chr16:3550543 | Cmo04g00836 | Cmo-Chr4:4161753 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9570 | PF07714 | PK_Tyr_Ser-Thr | 6.50E-47 | CL0016 | Cmo | TR | |
74251 | PF07714 | PK_Tyr_Ser-Thr | 6.50E-47 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00836 | - | - | cmos:111447691 | 795.423 |