Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00836 ATGTCGTACTATAGTGGAGATAATGCGAATGGACCTAAAGGTGGTAACTATTACAACGGTTCACAAAAACCAAATTGGCACAACAACAACGCAGGGGGGGGTCCGGGCGTGAACGGGTGGCCGCCCATGAGTAGTGAGAACATGACCACAAGCGGTAGTTTTACAGGGCCTCCTCTTCCTCCACCATCGCCATCCCTTGCGTTCGGGTTCAGCAAGAGCACGTTCACGTACGACGAGCTTGCAGCAGCAACAGGAGGGTTCGCGCACGGCAACTTACTTGGGCAGGGGGGGTTCGGATACGTGCACAAGGGGGTGTTGCCCAACGGGAAAGAGGTGGCGGTGAAGAGCCTCAAGGTGGGAAGCGGGCAGGGGGAGAGAGAGTTCATGGCTGAGGTTGAGATTATTAGTAGAGTCCACCATCGGCATTTGGTGTCCTTGGTTGGCTTTTGCATTGCCGGGGGACAGAGAATGTTGGTCTATGAGTTTGTTCCTAACAACACCTTGGAGCATCACCTTCATGGTAAAGACCTCCCTGTAATGGATTGGCCAACCAGGCTTCGTATTGCCATAGGTTCTGCCAAGGGTCTTGCTTACCTTCACGAAGATTGTCATCCAAAAATTATTCATAGAGATATCAAGTCCGCTAATATTCTAATTGATGCCAACTTCGAGGCAATGGTGGCCGATTTTGGATTGGCTAAGTTGTCTTCGGATACTAACACCCATGTCTCCACCAGGGTTATGGGTACATTTGGGTATTTAGCACCCGAATATGCATCAAGTGGGAAGCTAACAGAGAAGTCTGACGTGTTCTCATTTGGTGTAATGTTATTGGAACTCATTACTGGAAAACGACCGGTTGATCCTCATCATGTTATGGAGGATAGCTTAGTAGATTGGGCGCGAGCGATTATTAGCGGGGAAATGGGAGAAGATGTATACGAAGTGCTGGTGGATAAGCGATTAGGAAAGGAGTTCAATACTCAGGAGATGGGGCGCATGGTATCATGTGCTGCAGCCTCCATCCGTCACTCCGCTAGAAAACGCCCCAAAATGAGCCAAGTAGTACGAGCCCTGGAAGGGGATTATTCATTGGACGACCTAAACGACGGGATAAGACCAGGTCAAAGCTCAATTTACAGTGTGGCAGGGTCGGACTATGATTCAAATGCGTACCAAGCCGACATGTCGAGATTCAGGAAACTAGCTTTGGCACTAGAGCTTGTTCGATTTTCTGTTGCGCATTTGGTTCGTTCTTCTTCCAGATTTTCTTCTTTGTATTTGTTGAGTGGGCTGACAATGGCTGTCGAGGAGAAACCACGAGCTGATAATTCTGCAGAGTCCCCGACTTCGGTTCTAGAAAACGAGGATTTGTCTAATGGGGAAAATGAGATCAAGTTGGAGGAAGAGATAATTTTGGAAGTAAAAATTGGGGATTCCAGCTTTATATCAAAAGAGATGGCGGAAGAGGAGAAGAAATTGCTGGAAGCTCGGGTTAAGGAAGAGGAGGTCGAGAGACTTGAGGATTCAACAGAATCTCCAAACTTGAATGACAATCAATTTACCAAATTGGATGAACTTCTCACTCGAACACAGTTATACTCAGGATTTTTGCGGGAGAAAATGGATGACATCACAATTAATGGAGTGGAGGAGGACGAGAAATCTGTTGGGAAAAGTTGTGGGCGTGGTTCGAAGAGGAAAGCTTCTGCACGTTGTAATAATAGGAAGGCAAAAAGGGCTGTTGCAGCTATGCTGACTAGATTGAAAGATGGTGAGCGAGATGAAGATGTAAACTTGACCGAGGAAGAAAGAATAGAAAAGGAGCAGAGTGAACTCGTACCTCTGTTGACTGGTGGTAAATTGAAGTCCTACCAACTCAAGGGTGTCAAATGGTTGATTTCATTATGGCAGAATGGGCTGAATGGAATCCTTGCAGATCAAATGGGGCTTGGTAAGACAATTCAAACGATTGCCTTCCTTGCACATCTGAAAGGGAAGGGACTGGATGGACCTTACTTAGTAATTGCTCCTCTTTCCACTCTTTCAAATTGGATAAATGAAATATCGAGATTTGTGCCCACAGTGACTGCTATTGTATATCATGGTGACAAAAAACAAAGGGAAGAAATTCGAAGGAAGCACATGCCTAGAACAATTGGACCCAAATTCCCCATAGTGGTTACTTCGTATGAGATTGCAATGAGTGATGCTAAAAAGTTTTTGAGGCATTACAATTGGAAATATCTTGTCGTTGATGAGGGGCATCGGCTGAAAAACTCAAAATGCAAATTGCTGAAGGAGTTGAAGTACATAACTGTTGAAAATAAACTGCTGCTAAACTGGGACACCCCTGCAGAATAA 2364 45.69 MSYYSGDNANGPKGGNYYNGSQKPNWHNNNAGGGPGVNGWPPMSSENMTTSGSFTGPPLPPPSPSLAFGFSKSTFTYDELAAATGGFAHGNLLGQGGFGYVHKGVLPNGKEVAVKSLKVGSGQGEREFMAEVEIISRVHHRHLVSLVGFCIAGGQRMLVYEFVPNNTLEHHLHGKDLPVMDWPTRLRIAIGSAKGLAYLHEDCHPKIIHRDIKSANILIDANFEAMVADFGLAKLSSDTNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDPHHVMEDSLVDWARAIISGEMGEDVYEVLVDKRLGKEFNTQEMGRMVSCAAASIRHSARKRPKMSQVVRALEGDYSLDDLNDGIRPGQSSIYSVAGSDYDSNAYQADMSRFRKLALALELVRFSVAHLVRSSSRFSSLYLLSGLTMAVEEKPRADNSAESPTSVLENEDLSNGENEIKLEEEIILEVKIGDSSFISKEMAEEEKKLLEARVKEEEVERLEDSTESPNLNDNQFTKLDELLTRTQLYSGFLREKMDDITINGVEEDEKSVGKSCGRGSKRKASARCNNRKAKRAVAAMLTRLKDGERDEDVNLTEEERIEKEQSELVPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIAFLAHLKGKGLDGPYLVIAPLSTLSNWINEISRFVPTVTAIVYHGDKKQREEIRRKHMPRTIGPKFPIVVTSYEIAMSDAKKFLRHYNWKYLVVDEGHRLKNSKCKLLKELKYITVENKLLLNWDTPAE 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4161753 4166266 + CmoCh04G008360.1 Cmo04g00836 379811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00836 787 Pfam Protein tyrosine and serine/threonine kinase 90 359 IPR001245 GO:0004672|GO:0006468
Cmo04g00836 787 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 787 IPR014001 -
Cmo04g00836 787 Pfam SNF2-related domain 625 780 IPR000330 GO:0005524|GO:0140658
Cmo04g00836 787 MobiDBLite consensus disorder prediction 1 32 - -
Cmo04g00836 787 MobiDBLite consensus disorder prediction 439 460 - -
Cmo04g00836 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Cmo04g00836 787 SMART serkin_6 87 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00836 787 MobiDBLite consensus disorder prediction 1 60 - -
Cmo04g00836 787 Gene3D Transferase(Phosphotransferase) domain 1 163 369 - -
Cmo04g00836 787 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 9 410 - -
Cmo04g00836 787 SMART ultradead3 618 782 IPR014001 -
Cmo04g00836 787 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Cmo04g00836 787 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 9 410 - -
Cmo04g00836 787 Gene3D Phosphorylase Kinase; domain 1 64 162 - -
Cmo04g00836 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 591 779 IPR027417 -
Cmo04g00836 787 Gene3D - 592 785 IPR038718 -
Cmo04g00836 787 Coils Coil 485 510 - -
Cmo04g00836 787 CDD STKc_IRAK 93 361 - -
Cmo04g00836 787 ProSiteProfiles Protein kinase domain profile. 87 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00836 787 SUPERFAMILY Protein kinase-like (PK-like) 60 359 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00836 Cmo-Chr4:4161753 Cmo10g00657 Cmo-Chr10:3018920 3.14E-180 dispersed
Cmo18g01082 Cmo-Chr18:11371917 Cmo04g00836 Cmo-Chr4:4161753 8.18E-130 dispersed
Cmo16g00712 Cmo-Chr16:3550543 Cmo04g00836 Cmo-Chr4:4161753 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9570 PF07714 PK_Tyr_Ser-Thr 6.50E-47 CL0016 Cmo TR
74251 PF07714 PK_Tyr_Ser-Thr 6.50E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00836 - - cmos:111447691 795.423