Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00837 ATGAAATCTGATGTTGAGCTAATGCTCCCCCGGAAAAAAGAAATCATAATTTATGCAAACATGACTGAGTATCAGAAGAACTTTCAGGAACATTTAATTAACAAGACATTGGAAAATCATCTCTCAGAGAAGGGATCAGGACATGCTTTTAAAGGAAAGCTGAATAATTTGATGGTCCAGCTTCGGAAAAATTGCAACCATCCCGACCTCTTGGAATCAGTTTTTGATAAATCTTCTGCATATCCTCCTGTAGAGCAGATAGTTGAGCAGTGTGGAAAATTTTGCTTACTAGATAGATTGTTGACATGGTTATTTGCACGCAAGCATAAAGTCCTTGTATTCTCTCAATGGACTAAGATTTTGGATCTCATGGAGTACTATTTTAGTGAGAAGGGATTTGAAGTTTGCAGAATCGATGGTGGTGTTAAACTAGATGAAAGAAAAAGACAGATCCAGGAGTTCAATGATGGTAGCAGCAAGTACAGGATATTTATTTTTAAGCACGCGGGCTGGTGGTCTGGATTTGCAACCGCTCAGTCTATAGAGGGCCGCATTCTGAAAAGGGCCTTTAGTAAGTTGAAGCTTGAGCACGTGGTCATTGAGAAGGGGCAATTTCACCATGAACGGACAAAAGCCGACTCTGGAGCTGCTGTAGAGGCAGACATAAGCGACGATGATTTGGAGCGCATTTTAGACCGCTCTGATCTGGTTGTCCATCTGGTTCAGAGGATGAGAAAGCTAAAGTTAATGGTTTGTGGGTGGGATCATGCATGTAGTTGA 780 41.28 MKSDVELMLPRKKEIIIYANMTEYQKNFQEHLINKTLENHLSEKGSGHAFKGKLNNLMVQLRKNCNHPDLLESVFDKSSAYPPVEQIVEQCGKFCLLDRLLTWLFARKHKVLVFSQWTKILDLMEYYFSEKGFEVCRIDGGVKLDERKRQIQEFNDGSSKYRIFIFKHAGWWSGFATAQSIEGRILKRAFSKLKLEHVVIEKGQFHHERTKADSGAAVEADISDDDLERILDRSDLVVHLVQRMRKLKLMVCGWDHACS 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4166756 4169460 + CmoCh04G008370.1 Cmo04g00837 379812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00837 259 Gene3D - 6 169 IPR027417 -
Cmo04g00837 259 PANTHER SNF2/RAD54 HELICASE FAMILY 1 166 - -
Cmo04g00837 259 PANTHER SNF2/RAD54 HELICASE FAMILY 175 240 - -
Cmo04g00837 259 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 175 240 - -
Cmo04g00837 259 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 1 166 - -
Cmo04g00837 259 Pfam Class II histone deacetylase complex subunits 2 and 3 20 151 IPR021006 GO:0016575|GO:0070823
Cmo04g00837 259 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 211 IPR027417 -
Cmo04g00837 259 CDD SF2_C_SNF 82 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00837 K19001 HELLS, DDM1; ATP-dependent DNA helicase - csv:101214753 367.081
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00837 Cmo16g00712 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00837 Cmo-Chr4:4166756 Cmo08g01181 Cmo-Chr8:7509730 1.10E-26 dispersed
Cmo04g00837 Cmo-Chr4:4166756 Cmo16g00712 Cmo-Chr16:3550543 1.06E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g955 Blo04g00920 Blo16g00039 . . Bpe15g00433 Bpe13g00452 . . Cmo04g00837 Cmo16g00712 . . . . . . . . . . . . . . . . . . . . . Cone8ag0805 . . . . . Chy07g01291 . . . Bda11g01874 . . . Bma03g00992 Bma06g00128 . . . Cma16g00655 . . . . Cpe14g00559 . . . . . . . Cla07g00866 Cam07g0939 Cec07g1004 Cco07g0982 Clacu07g0912 Cmu07g0912 Cre07g1283 . Csa04g00510 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009588 2 0 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00837 Cmo_Chr04 FPKM 2.811594 3.644076 3.634273 2.95639 3.04438 3.001742 2.938271 4.946961 4.957282 3.893483