Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00839 ATGTGGCGATGTGTTTCTCGTGGCCTTCGCGCTTCTTCCTCTTCGTTTTTCAGGAAATCGTCCCCCAATGATCACCTCAGATCTCACGTTTCTAGATTCTTCTCCGTCGATTCGCTAGCTGTTTCAAATTTATTTCCTACGGCTGCGGCGGCAGGTCGCTCCTCATACACTGTGGTTGATCACACATACGATGCGGTTATGGTAGGAGCGGGTGGTGCAGGGCTTCGATCTGCTATAGGACTGTCAGAGCATGGATTTAATACTGCTTGCATTACTAAGCTTTTCCCAACTCGTTCTCACACGGTTGCCGCTCAGGGAGGTATAAATGCTGCACTGGGAAACATGACTGAGGATGATTGGAGGTGGCACATGTACGACACTGTCAAGGGGAGTGATTGGTTAGGAATACGACACATGTACGACACTGTCAAGGGGAGTGATTGGTTAGGAATACGTGATCAGGATGCCATTCAATACATGTCTAGAGAAGCTCCGAAAGCAGTCATTGAGCTTGAGAACTATGGACTCCCATTTTCTCGTGGACAGGCATGTCGTTGTGCATGTGCTGCTGATCGAACGGGGAATGCTTTATTGTATACTCTCTATGGCCAGGCTATGAAGCATAACACACAAATTTTTGTGGAATATTTTGCGTTGGATCTATTAATGAATAGTGATGGTAGCTGCCAGGGGGTGATAGCATTAAATATGGAGGACAGTACACTACATCGGTTCCGAGCTGCATCAACAATTTTGGCTACTGGGGGTTATGGCAGAGCATATTTCTCTCCAACCTCTGCTCATACATGCACTGGAGATGGAAATGCAATGGTTGCACGTGCCGGGCTTCCGCTTGAGGACTTGGAGTTTGTGCAGTTTCATCCAACGGGAATATATGGTGCTGGGTGCCTTATTACTAAAGGATCTCGTGGTGAAGGTGGCATTCTTAGGAACAGTGAAGGTGAGTGCTTTATGGAACGATATGCTCCAACAGCGAAGGATCTTGCATCAAGGGACGTTGTCTCAAGATCCATGACTATGGAAATTCGAGAGGGTCGTGGCATAGGAGAGACGGGTATCTCAGAAACTGCTGCCATATTTGCTGGCGTTGATGTTACCAAAGAGCCCATTCCTGTCTTATCTACAGTGCATTACAATATGGGTGGAATTCCCACGAATTATCGTGGACAGGTAGTTACAATCAAGGGCAATGATCCAGATGCTAATAGGCTTGGCGCAAGGCAAAATCCGTTGGAAAAAGATGCTGGTGAGAAGACAATTGCATGGCTAGACAAACTAAGGAACTCAAATGGTTCACTGCCCACCTCGAAGATTCGGTTAAACATGCAACGAATTATGCAAAACAATGCTGCTGCTGCTGTTTTCCGAACACTGGAGACCTTGGAAGAAGATACAATTGAATTGGAAAATCTTTTGATAAATGCCTGCATTACCATGCACTCTGCGGAAGCCAGGAAAGAGAGCAGAGGAGCACATGCTCGTGAAGATTTCACAAAAAGGGATGATGAGAACTGGATGAAGCACACGTTGGAGTAA 1557 46.37 MWRCVSRGLRASSSSFFRKSSPNDHLRSHVSRFFSVDSLAVSNLFPTAAAAGRSSYTVVDHTYDAVMVGAGGAGLRSAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGIRHMYDTVKGSDWLGIRDQDAIQYMSREAPKAVIELENYGLPFSRGQACRCACAADRTGNALLYTLYGQAMKHNTQIFVEYFALDLLMNSDGSCQGVIALNMEDSTLHRFRAASTILATGGYGRAYFSPTSAHTCTGDGNAMVARAGLPLEDLEFVQFHPTGIYGAGCLITKGSRGEGGILRNSEGECFMERYAPTAKDLASRDVVSRSMTMEIREGRGIGETGISETAAIFAGVDVTKEPIPVLSTVHYNMGGIPTNYRGQVVTIKGNDPDANRLGARQNPLEKDAGEKTIAWLDKLRNSNGSLPTSKIRLNMQRIMQNNAAAAVFRTLETLEEDTIELENLLINACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLE 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4183510 4189570 + CmoCh04G008390.1 Cmo04g00839 379814

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 135 IPR030664 -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 181 408 - -
Cmo04g00839 518 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 437 517 IPR037099 GO:0016491
Cmo04g00839 518 Pfam FAD binding domain 64 134 IPR003953 -
Cmo04g00839 518 Pfam FAD binding domain 137 400 IPR003953 -
Cmo04g00839 518 Gene3D - 47 136 IPR036188 -
Cmo04g00839 518 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 288 385 IPR027477 -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 135 - -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 138 181 - -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 471 517 IPR030664 -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 181 408 IPR030664 -
Cmo04g00839 518 Gene3D - 431 518 - -
Cmo04g00839 518 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 98 107 IPR003952 GO:0016491
Cmo04g00839 518 Gene3D - 137 400 IPR036188 -
Cmo04g00839 518 Pfam Fumarate reductase flavoprotein C-term 471 517 IPR015939 GO:0016491
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 411 471 - -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 471 517 - -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 411 471 IPR030664 -
Cmo04g00839 518 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 138 181 IPR030664 -
Cmo04g00839 518 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 298 380 IPR027477 -
Cmo04g00839 518 SUPERFAMILY FAD/NAD(P)-binding domain 54 403 IPR036188 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00839 K00234 SDHA, SDH1; succinate dehydrogenase (ubiquinone) flavoprotein subunit [EC:1.3.5.1] - csv:101211616 806.594
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00839 Cmo-Chr4:4183510 Cmo04g02840 Cmo-Chr4:20299305 9.88E-45 dispersed
Cmo04g00839 Cmo-Chr4:4183510 Cmo16g00712 Cmo-Chr16:3550543 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g958 . . . Bda10g00132 . . . Bma15g01000 Cmo04g00839 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag1616 Cone9ag1541 . . Chy07g01293 . . Blo06g00133 . Bda14g01154 Bpe10g00117 . . . . . . . . . . . Cpe14g00560 . . . . . . . Cla07g00870 Cam07g0941 Cec07g1008 Cco07g0987 Clacu07g0917 Cmu07g0916 Cre07g1287 Lsi07g00203 Csa04g00508 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005005 3 1 1 1 1 2 2 1 2 1 2 2 1 1 1 1 2 2 2 2 1 0 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00839 Cmo_Chr04 FPKM 681.491699 714.69574 5.352407 5.466293 13.72611 7.802938 8.627122 0.0 0.221601 0.0