Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00840 ATGGCGTATATGTGCGCAGACAGTGGCAATCTAATGGCAATTGCCCAACAAGTCATCAAGCAGAAACAACAGCAGGAGCAGCAGCAGCAACAGCAGCAGCAGCTTTGTCCGCTTACCCCCTTTTCGCTTCTTCCTTGGACTACTACCAATTCTTCTCCAACAATGGCTTCTTCTTCTTCTTCTCCTAATTTATCCTTTGGGGTTTCTGGTTCTGCCTTCGCTGACCCCTTCCAGGTCGCCGGAGATGCGGATTCTGCTGAGCCGGCTTTTCATTTTCCCAATTTGGAGCATCCATCTGCTGGGTTTAGGTTCTTCCCTAACTTCGGCGGTGGGGAGTTCGACTCTGATGAGTGGATGGATAGTTTGGTCGGCGGTGGAGATTCGACGGATAGCTCTACTCTGCCGTCTGGTTGTGATGCTTATGCCGAGTATGGTCTCTTTGGTGTGGATCTCTTTAATGGCTCTCCGAGTCGACTCGTTGTCGCTTGCTCTCCGCCGTCTGATTTTAACCGAGCTGTTCTACCGGAAAGTTCGTGCAACACGAGTACCGTTCCGCCGCCGCCGTGGAGTTCTCCTCCGCCATCAATAAAGGATGCTAGAGTAGCCAATCCACCGGCGGAGAAGCTGCAGACGAACGACGTTGTAGAAGCCTCGTCGAGCGCGCCTGAAGAGGTGTTGCCGTCCCCGCCACCGCCGCTTCTTAAAGTCTTGCTGGATTGTGCGCGGCTCTGTGATTCCGAGCCCGACAGAGCCGTAAAAACTCTCGATCGGATCGGTAAATCGTTGCTAGAACATGGAGATCCGATTGAGCGAGTGGCGTTTTACTTCGGCGAAGCTCTTCGGAACAGATTATCCCCGGCGGCGAGGAACAATTTCATGGATTCAATTGAGACCGATGCTAATTCCGAAGATTTCTTGCTCTCGTACAAAGCTCTGAACGACGCTTGTCCTTACTCCAAGTTCGCACATCTCACGGCGAACCAAGCAATTCTGGAAGCTACACAGAGAGCCAGTAAAATACACATTGTCGACTTCGGAATCGTTCAGGGCGTTCAATGGGCGGCGCTTCTGCAAGCTTTGACCACGCGAGCCACCGGAAAGCCTATCAAAGTTCGTATCTCCGGAATACCTGCACCATCGCTTGGGGAGTCTCCAGCGGCGTCGCTGTACGCCACCGGCAATAGACTCTCCGAGTTCGCAAAGCTTCTGGAACTGAATTTCGAGTTCGAACCGATTCTAACGCCGATTGAGGATCTGAACAAATCGAGCTTCAGCATCCAATCGGACGAGGTATTGGCGGTGAATTTCATGCTTCAATTGTACGGTCTCCTCGACGAGGTTCCGGTTGGTGTTCATAATGCTCTCCGATTAGCGAAATCGCTAAGCCCTAAAATTGTGACTCTCGGCGAGTACGAGGCGAGTTTGAACCGGACTGAATTCTACAATCGCTTCAAAAACGCATTGAAATACTACTCCGCCATTTTCGAATCGCTAGAGCCAAACCTGCCTCGAGACTCGCCGGAAAGGCTCCAATTAGAGAAACTGTTGATCGGTCGTCGAATCGCCGGCGTGATTGGAACGGAAGAAGAATCAGGAAGCAAAAGAAGAGTACGCATGGAAGACAAAGAAGAATGGAAGAATTTGATGGAGAGCTCCGGATTCGAACCTGTAGCACTCAGCCATTACGCCATTAGTCAGGCCAAAATACTTCTATGGAACTACAATTACAATTCTCTCTACTCTCTGATCGAATCGGCACCGGAATTTCTTTCTCTGGCATGGAACGACGTACCTCTCTTAACTGTATCTTCCTGGCGTTGA 1821 50.8 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQQQQQLCPLTPFSLLPWTTTNSSPTMASSSSSPNLSFGVSGSAFADPFQVAGDADSAEPAFHFPNLEHPSAGFRFFPNFGGGEFDSDEWMDSLVGGGDSTDSSTLPSGCDAYAEYGLFGVDLFNGSPSRLVVACSPPSDFNRAVLPESSCNTSTVPPPPWSSPPPSIKDARVANPPAEKLQTNDVVEASSSAPEEVLPSPPPPLLKVLLDCARLCDSEPDRAVKTLDRIGKSLLEHGDPIERVAFYFGEALRNRLSPAARNNFMDSIETDANSEDFLLSYKALNDACPYSKFAHLTANQAILEATQRASKIHIVDFGIVQGVQWAALLQALTTRATGKPIKVRISGIPAPSLGESPAASLYATGNRLSEFAKLLELNFEFEPILTPIEDLNKSSFSIQSDEVLAVNFMLQLYGLLDEVPVGVHNALRLAKSLSPKIVTLGEYEASLNRTEFYNRFKNALKYYSAIFESLEPNLPRDSPERLQLEKLLIGRRIAGVIGTEEESGSKRRVRMEDKEEWKNLMESSGFEPVALSHYAISQAKILLWNYNYNSLYSLIESAPEFLSLAWNDVPLLTVSSWR 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4192956 4194776 + CmoCh04G008400.1 Cmo04g00840 379815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00840 606 Coils Coil 12 35 - -
Cmo04g00840 606 MobiDBLite consensus disorder prediction 177 198 - -
Cmo04g00840 606 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 234 605 IPR005202 -
Cmo04g00840 606 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 234 605 - -
Cmo04g00840 606 Pfam GRAS domain family 234 606 IPR005202 -
Cmo04g00840 606 ProSiteProfiles GRAS family profile. 224 606 IPR005202 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00840 Cmo07g00492 CCT
Cmo03g00782 Cmo04g00840 CCT
Cmo04g00840 Cmo16g00706 CST
Cmo04g00840 Cmo16g00713 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00782 Cmo-Chr3:6454476 Cmo04g00840 Cmo-Chr4:4192956 0 dispersed
Cmo04g00840 Cmo-Chr4:4192956 Cmo07g00492 Cmo-Chr7:2224850 0 dispersed
Cmo16g00713 Cmo-Chr16:3569005 Cmo04g00840 Cmo-Chr4:4192956 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9571 PF03514 GRAS 4.30E-107 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00840 - - cmax:111479082 1076.62