Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00845 ATGGACTCCCCAACCCACGTCGCTCTCATCTCAAGCCCCGGGATGGGCCACCTCTTCCCCTCTCTCGAGCTCGCCACGCGACTCTCCACGCGCCACCACCTCACCCTCACTGTTTTCCTCGTCACCTCCCACTCCTCCTCCGCCGAAAATAACGTCGTTGCCGCCGCCGAGGCCACTGGCCTCTTTACTGTCGTCGAACTCCCACCGGCTGACATGTCCGACGTCACCGATTCCACTGTCGTTGGCCGCCTTGCCATCACCATGCGCCGCCACGTCCCGGCTCTCCGCTCGGCCATCTCTGCTCTCACCTCCCGCCCCTCCGCCCTCATTGCAGACATCTTCTCCACCGAGGCCTTTGCCGTCGCCGACGAGTTCCACATGGCCAAATACGTCTTCGTCGCCTCTAATGCATGGTTTTTAGCCTTGACCATTTACGCCCAGGTTCTCGACAAGCAAATCGTCGGGCAGTACGTGGACCAGAAAGAACCGCTTCAAATCCCTGGATGCGAACCGGTTCGTCCATGTGACGTCGTAGACCCGATGCTGGACCGGACCGAATCCCAGTATTACGAGTACGTCAAAATGGGGAGGGCAATAGCGTCGAGCCACGGCGTTTTGGTTAACTCGTGGGATGAGTTGCAAGGTCGCACACTCGCATCGTTCAAAGATCGGAGTCTGTTGGGTCGAGTAATGAACGCGCCGGTTTACTCGATCGGACCGATCGTGCGACATTTCGGCTCTGGGAAAGACGGCTCGAGCGAGCTGTTCAACTGGTTGAGGAAGCAGCCCGGGAAGTCGGTGATTTACGTGTCGTTCGGGAGCGGCGGAACGTTGTCGTTTGAGCAAATGACGGAAATGGCTCATGGCTTGGAGTTGAGTCGGCAGAGATTTGTTTGGGTGGTCCGGCCGCCCACGGTAAACGTGAGGTCGGATGCGATGTTTTTCACGACAGGGGATGGGAGTGAGGACCAATCAGAGGCGAGATATTTGCCGGAGGGGTTTTTGGAGCGGACTAGCGAGGTGGGGTTTCTGGTGTCGATGTGGGCGGAGCAAACGGCGGTGCTGGGGAGTCCGGCAGTGGGGGGATTTTTCACGCACGGCGGATGGAACTCATCATTGGAAGGAATTACGAAGGGAGTTCCGATGATAGTGTGGCCGTTGTACGCGGAGCAGAGGATGAACGCCACGATGCTGGCGGATGAGATGGGGGTAGCGGTGCGGCCGAAGGAGCTGCCAGGGAATGCGGTGATCGGGAGGGAGGAGATCGCGGCGATGGTGAGGAAGATAATGGCGGAGGAGGACGAAGAAGGGAGAGCCATAAGAGCGAAGGCGATGGAACTTCAACGAAGTGCAGAAAAGGCCTGTGCGCAAGGAGGCTCGTCGTACGAGAACTTTGCTCGAGTTGTGAAACTTTTTGGCCGTACGGGATAA 1431 58.28 MDSPTHVALISSPGMGHLFPSLELATRLSTRHHLTLTVFLVTSHSSSAENNVVAAAEATGLFTVVELPPADMSDVTDSTVVGRLAITMRRHVPALRSAISALTSRPSALIADIFSTEAFAVADEFHMAKYVFVASNAWFLALTIYAQVLDKQIVGQYVDQKEPLQIPGCEPVRPCDVVDPMLDRTESQYYEYVKMGRAIASSHGVLVNSWDELQGRTLASFKDRSLLGRVMNAPVYSIGPIVRHFGSGKDGSSELFNWLRKQPGKSVIYVSFGSGGTLSFEQMTEMAHGLELSRQRFVWVVRPPTVNVRSDAMFFTTGDGSEDQSEARYLPEGFLERTSEVGFLVSMWAEQTAVLGSPAVGGFFTHGGWNSSLEGITKGVPMIVWPLYAEQRMNATMLADEMGVAVRPKELPGNAVIGREEIAAMVRKIMAEEDEEGRAIRAKAMELQRSAEKACAQGGSSYENFARVVKLFGRTG 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4220651 4222504 - CmoCh04G008450.1 Cmo04g00845 379820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00845 476 ProSitePatterns UDP-glycosyltransferases signature. 348 391 IPR035595 -
Cmo04g00845 476 Gene3D Glycogen Phosphorylase B; 253 456 - -
Cmo04g00845 476 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 253 401 IPR002213 GO:0008194
Cmo04g00845 476 Gene3D Glycogen Phosphorylase B; 6 461 - -
Cmo04g00845 476 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 473 - -
Cmo04g00845 476 PANTHER UDP-GLYCOSYLTRANSFERASE 72E1 2 470 - -
Cmo04g00845 476 PANTHER GLYCOSYLTRANSFERASE 2 470 - -
Cmo04g00845 476 CDD GT1_Gtf-like 6 456 IPR002213 GO:0008194
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00845 K12356 UGT72E; coniferyl-alcohol glucosyltransferase [EC:2.4.1.111] - csv:101214511 726.087
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00845 Cmo-Chr4:4220651 Cmo14g02160 Cmo-Chr14:15526459 2.54E-116 dispersed
Cmo04g01770 Cmo-Chr4:8936312 Cmo04g00845 Cmo-Chr4:4220651 7.11E-59 transposed
Cmo16g00722 Cmo-Chr16:3609850 Cmo04g00845 Cmo-Chr4:4220651 0 wgd
Cmo03g00805 Cmo-Chr3:6526951 Cmo04g00845 Cmo-Chr4:4220651 2.20E-132 wgd
Cmo04g00845 Cmo-Chr4:4220651 Cmo07g00505 Cmo-Chr7:2295378 5.11E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g919 . . . . . . . Bma15g01011 Cmo04g00845 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy07g01301 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003276 1 1 1 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 2 1 1 1 1 1 1 1 4 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00845 Cmo_Chr04 FPKM 1.951389 1.741786 10.977706 10.503017 4.212126 4.387197 4.226198 1.301232 1.397261 1.266873