Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00847 ATGAACGGCCACAAGCGAAACACCACCACCGCCACCGCCACCGCCACCAACAGCAGTCCCGTCGGCAGCCCCACCTCTGGCAACATCTCCGACAGCTCCACGAAAGAACAAGACCGTTTCCTTCCGATCGCAAACGTGAGCCGAATAATGAAAAAATCCCTTCCGCCGAACGCGAAAATCTCGAAAGAGGCGAAAGAGACCGTACAAGAATGCGTGTCGGAGTTTATCAGCTTCATCACCGGTGAGGCCTCGGACAAGTGCCAAAGGGAAAAACGGAAGACGATCAACGGCGACGATTTGCTCTGGGCCATGACCACTCTGGGATTCGAAAATTATGTCACCACTTTGAAGACTTACCTCAACAAATATAGAGAAACAGAGGAGGAGAAGCATTCTTTGGCCAGACAGGACGATCACTCCCCGTCTCCTGCAAAATCCACGGCGGCGGTCTGTCCAGCCGAACCGATTATTGGCGGGAAATCGGCCAATTCCGTGTTCGATTTTCAGAATTTAAATTCTGGGTTTTATTCACTCGGGGCTCATAATCATAATCACAACCATCATCAAGGAAATCCAAAGAGTTACCATATAATCGACGGCGTTGGATTTGGGGAAAATTTAAGGGGTTTCAATTTGAGTGCAGTCCATGAAAATGAAGGAAATCGAGGTCGAGCTATGGCGCCTCATCTTCAACAGAGCTCTGGTTGGTGA 711 49.65 MNGHKRNTTTATATATNSSPVGSPTSGNISDSSTKEQDRFLPIANVSRIMKKSLPPNAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFENYVTTLKTYLNKYRETEEEKHSLARQDDHSPSPAKSTAAVCPAEPIIGGKSANSVFDFQNLNSGFYSLGAHNHNHNHHQGNPKSYHIIDGVGFGENLRGFNLSAVHENEGNRGRAMAPHLQQSSGW 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4228134 4228844 - CmoCh04G008470.1 Cmo04g00847 379822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00847 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11 12 190 - -
Cmo04g00847 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 40 104 IPR003958 -
Cmo04g00847 236 Coils Coil 116 136 - -
Cmo04g00847 236 MobiDBLite consensus disorder prediction 1 37 - -
Cmo04g00847 236 ProSitePatterns NF-YB/HAP3 subunit signature. 71 87 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo04g00847 236 PRINTS CCAAT-binding transcription factor subunit A signature 68 86 - -
Cmo04g00847 236 PRINTS CCAAT-binding transcription factor subunit A signature 87 105 - -
Cmo04g00847 236 PRINTS CCAAT-binding transcription factor subunit A signature 106 124 - -
Cmo04g00847 236 MobiDBLite consensus disorder prediction 130 149 - -
Cmo04g00847 236 Gene3D Histone, subunit A 27 150 IPR009072 GO:0046982
Cmo04g00847 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 190 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo04g00847 236 SUPERFAMILY Histone-fold 37 142 IPR009072 GO:0046982
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00847 Cmo-Chr4:4228134 Cmo20g00682 Cmo-Chr20:3345325 1.23E-55 dispersed
Cmo10g01165 Cmo-Chr10:10362746 Cmo04g00847 Cmo-Chr4:4228134 1.01E-33 transposed
Cmo16g00726 Cmo-Chr16:3621082 Cmo04g00847 Cmo-Chr4:4228134 1.56E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9572 PF00808 CBFD_NFYB_HMF 6.20E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00847 K08065 - csv:116406241 355.14