Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00848 ATGAAGAAGCGGCTGAATTGGGTTTTGGGCTTGCTTTTGTTCATCTCTATTGGGAAATTCTGTGCAAATGTCTCTGCTACTGTAGAAGGTGATCTCCGTTTTTGTAATTTTTCTTCTTCTGTTGTGGTTAAATTTGACACTACTGCACTTCATGTATTTCGATCCAATTTGGAAGATCCAAACAATGTTCTGCAGAGTTGGGATCCCACCCTTGTGAACCCCTGCACTTGGTTTCATGTCACTTGCAACAATGAAAATAACATCATAAGAGTTGACCTTGGAAATGCTGGATTGTCTGGTAGATTAGTTCCGCAGCTTGGTCAACTTAAAAGCCTTCAATACTTGGAGCTTTATGGCAACAACATAAGTGGAGACATTCCATTTGATCTTGGGAATCTGGAAAACTTGGTGAGCCTAGACCTATACTTGAACGCGTTAACTGGTCCGATTCCCGACACGTTTGGCAAGCTCACACAATTGCGTTTCCTTCGGCTAAATGACAACAAACTATCGGGATCGATACCGATGTCCTTGACTAATATTTCCACCCTGCAAGTCTTGGATCTATCGAACAACCTTTTATCTGGAAGGGTTCCAAATAATGGCTCATTTTCACTCTTTACTCCCATTAGTTTTGCAACAAACTTGGATCTATGCGGTCTGGTAACCGGGAAGCCCTGCCCCGGGGATCCTCCTTTTTCTCCTCCGCCACCATTTGTTCCACAGTCGACGTTTTCTTCCTATGAGGTAAACAATCCCAATGGAGCAATTGTTGGAGGAGTGGCCGCTGGTGCTGCTTTACTTTTTGCAACTCCAGCTATCATATTCGTCTATTGGCATCGGCGGAGATCACGAGAGATATTCTTTGATGTTCCTGGTTTGTTTCTGTTGCAACTCACCAAGGCGTTTGCTTATGCAGCGGAAGAAGATTCAGAGCTCAACTTGGGGCAGCTGAAAAGATTTTCTCTGAGAGACTTACAAGTTGCCACAGATAACTTCAGCAACAAAAATATTCTTGGTCGAGGTGGATTCGGTAAAGTTTACAGGGGACGCTTGGCTGATGGCTCGTTAGTAGCAGTAAAACGGCTCAAAGAAGAGCGTACTCCAGGTGGAGAGTTACAGTTCCAAACAGAAGTAGAGATGATTAGCATGGCCGTGCATCGAAATCTCTTGCGACTGCATGGATTTTGTACAACGACAACCGAACGCCTCCTTGTTTATCCTTATATGGCTAACGGAAGTGTTGCATCATGCTTAAGAGAACGTCCACAATCCGAAGCTCCTCTTGACTGGCCAACTCGAAAGAAAGTTGCACTAGGCTCTGCAAGGGGTCTTTCTTACTTACACGATGGATGCGATCCGAAAATCATACATCGTGATGTGAAAGCTGCGAACATTTTACTGGATGAGGAGTTCGAGGCTGTCGTCGGTGATTTCGGTCTCGCAAAGCTGATGGACTACAAGGACACTCATGTTACAACAGCAGTAAGAGGTACTATTGGACATATAGCTCCGGAGTATCTCTCAACTGGGAAGTCATCTGAAAAGACTGATGTTTTTGGTTATGGCATTATGCTGTTGGAGCTCATAACCGGGCAGAGGGCGTTCGATCTTGCTCGACTCGCGAACGATGAAGATGTTATGCTGCTTGATTGGGTAAAAGGCCTTCTGAAAGAGAAAAAGTTGAAGATGTTGGTTGATCCTGATCTGAGGGACAATTATGATGAAATAGAAGTTGAGCAAATCATCCAAGTAGCACTTCTCTGCACACAGAGCTCACCCATGGAACGACCAAAAATGTGTGAGGTGGTCAGAATGCTTGAAGGTGATGGCTTAACGGAGCGATGGGAGGAATGGCAGCGAGTCGAGGTAGTCTACCACGAAACCGAATTGGCATCTTCTCAAACTTCTGAATGGATGGTCGATTCAACCGAAAATGTTCGTGCTTTCGAATTATCTGGTCCTAGGTGTTGTTTTACCCTTTAG 1986 44.71 MKKRLNWVLGLLLFISIGKFCANVSATVEGDLRFCNFSSSVVVKFDTTALHVFRSNLEDPNNVLQSWDPTLVNPCTWFHVTCNNENNIIRVDLGNAGLSGRLVPQLGQLKSLQYLELYGNNISGDIPFDLGNLENLVSLDLYLNALTGPIPDTFGKLTQLRFLRLNDNKLSGSIPMSLTNISTLQVLDLSNNLLSGRVPNNGSFSLFTPISFATNLDLCGLVTGKPCPGDPPFSPPPPFVPQSTFSSYEVNNPNGAIVGGVAAGAALLFATPAIIFVYWHRRRSREIFFDVPGLFLLQLTKAFAYAAEEDSELNLGQLKRFSLRDLQVATDNFSNKNILGRGGFGKVYRGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLHGFCTTTTERLLVYPYMANGSVASCLRERPQSEAPLDWPTRKKVALGSARGLSYLHDGCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDEDVMLLDWVKGLLKEKKLKMLVDPDLRDNYDEIEVEQIIQVALLCTQSSPMERPKMCEVVRMLEGDGLTERWEEWQRVEVVYHETELASSQTSEWMVDSTENVRAFELSGPRCCFTL 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4233955 4236953 + CmoCh04G008480.1 Cmo04g00848 379823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00848 661 Pfam Protein kinase domain 334 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00848 661 ProSiteProfiles Protein kinase domain profile. 333 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00848 661 Gene3D Ribonuclease Inhibitor 43 228 IPR032675 -
Cmo04g00848 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 456 468 IPR008271 GO:0004672|GO:0006468
Cmo04g00848 661 PANTHER - 40 656 - -
Cmo04g00848 661 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 40 656 - -
Cmo04g00848 661 Gene3D Phosphorylase Kinase; domain 1 303 409 - -
Cmo04g00848 661 SMART serkin_6 333 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00848 661 Pfam Leucine rich repeat N-terminal domain 46 83 IPR013210 -
Cmo04g00848 661 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Cmo04g00848 661 SUPERFAMILY L domain-like 45 210 - -
Cmo04g00848 661 ProSitePatterns Protein kinases ATP-binding region signature. 339 361 IPR017441 GO:0005524
Cmo04g00848 661 Gene3D Transferase(Phosphotransferase) domain 1 410 627 - -
Cmo04g00848 661 SUPERFAMILY Protein kinase-like (PK-like) 314 608 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00848 Cmo-Chr4:4233955 Cmo09g01218 Cmo-Chr9:9420581 0 dispersed
Cmo09g01219 Cmo-Chr9:9592920 Cmo04g00848 Cmo-Chr4:4233955 8.02E-97 dispersed
Cmo04g00848 Cmo-Chr4:4233955 Cmo04g00411 Cmo-Chr4:2031640 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74252 PF00069 Pkinase 1.30E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00848 K13418 - csin:114301400 946.806