Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00850 ATGGGATTGTACGAACCTGTCAACAAGCTTGGAATGTGGGGGAACACTTTTAGAAGCAATGCCAATTTAGATGTACCATCATCAACTCTCATTATGGAAGTTGATACCAAACTCGAGAACCAGATTCAAAGACGGCTCGCCCAAAATCGGGAAGCAGCCCGCAAAAGTCGCATACGAAAGAAGGCCTATATTAAGCAACTGGAAACGAGCCGTTTGAGACTTATTCGATTAGAGCAAGAGCTTGAAAAAGCAAGGCAACAAGATCTGTTTGCTGGATCTCGATTTGATCATTATCAGATGGGCTTATCTGGAACCACAAATTCAGAGTACGAGCAATGGGTAGAAGAGCAGAACAAGCAGATTTGTGATCTAAGGAATGTTGTGCATGCTGATATCACTGATATTGAGCTTCGAATACTTGTAGAAAATGCAATGAGACACTACTTCAAATTTTTTCACATGAAAGCCAAAGCTGCAAAAACCGATGTTTTTTACATTATGTCAGGCATGTGGAAAACTTCAGCCGAAAGACTTTTCTTATGGATAGGAGGAATTCGCCCTTCAGAACTTCTCAAGGTCTTGATACCTCAACTGGAGACACTGACTGATCAACAAATTTCGGAAACTAGTAGCCTTAGGAAATCATGTCTACAAGCAGAAGATGCTTTAAGACAAGGTATGGAAAAACTACAACAAAACCTATTTGAGAGCATAGTGGCTAGTCAACTCGATGAAGGAAGTTATCCCCTACAGATGACCGCTGCAATCGAAAGATTAGAAGCACTCATTAGCTTTGTGAATCAGGTAACATTTAATCTCAAGTTCATGAACTGTGTTATTTTAACATTCTCTTTGGTCATCTTAACCTTCCGTGGCCCAAGTCCAAGCCCTGATGATATCTACCTCTTAATGTCTCCTAAAGTTGGCCTTAGGGCAGCTTTGGCTTCCTAG 951 41.01 MGLYEPVNKLGMWGNTFRSNANLDVPSSTLIMEVDTKLENQIQRRLAQNREAARKSRIRKKAYIKQLETSRLRLIRLEQELEKARQQDLFAGSRFDHYQMGLSGTTNSEYEQWVEEQNKQICDLRNVVHADITDIELRILVENAMRHYFKFFHMKAKAAKTDVFYIMSGMWKTSAERLFLWIGGIRPSELLKVLIPQLETLTDQQISETSSLRKSCLQAEDALRQGMEKLQQNLFESIVASQLDEGSYPLQMTAAIERLEALISFVNQVTFNLKFMNCVILTFSLVILTFRGPSPSPDDIYLLMSPKVGLRAALAS 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4241780 4247334 - CmoCh04G008500.1 Cmo04g00850 379825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00850 316 Gene3D - 40 90 - -
Cmo04g00850 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 39 83 IPR004827 GO:0003700|GO:0006355
Cmo04g00850 316 Coils Coil 60 87 - -
Cmo04g00850 316 ProSiteProfiles DOG1 domain profile. 103 316 IPR025422 GO:0006351|GO:0043565
Cmo04g00850 316 PANTHER TRANSCRIPTION FACTOR TGA9 1 41 - -
Cmo04g00850 316 PANTHER TRANSCRIPTION FACTOR TGA1 1 41 - -
Cmo04g00850 316 Pfam Seed dormancy control 120 195 IPR025422 GO:0006351|GO:0043565
Cmo04g00850 316 PANTHER TRANSCRIPTION FACTOR TGA1 41 269 - -
Cmo04g00850 316 SUPERFAMILY Leucine zipper domain 41 82 IPR046347 GO:0003700|GO:0006355
Cmo04g00850 316 Pfam bZIP transcription factor 42 69 IPR004827 GO:0003700|GO:0006355
Cmo04g00850 316 PANTHER TRANSCRIPTION FACTOR TGA9 41 269 - -
Cmo04g00850 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 44 59 IPR004827 GO:0003700|GO:0006355
Cmo04g00850 316 SMART brlzneu 36 119 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00850 Cmo-Chr4:4241780 Cmo04g03125 Cmo-Chr4:21686648 7.99E-86 dispersed
Cmo16g00731 Cmo-Chr16:3639103 Cmo04g00850 Cmo-Chr4:4241780 7.81E-159 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9573 PF14144 DOG1 3.20E-27 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00850 K14431 - csv:116401613 423.705