Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00855 ATGGCGGAGCTTCTATTTGATGATATTTTCAAGGTCAAGTGCGTCAACCCAGATGTTTCTAGAATTGAAGCACGGAGTGAGAAGCTTTCCATGTATATGCTGCTGGATGTAAATACAGAGATATATCCAATTGATGAAGGTGACAAGATTCTGATGGTCCTGTCTCCTACGCTGAATTATGATGGAGCTCCTGTTACCAGCTATAGTGGTCAAGAAGGGAAGAAATCACTAGCAGATAAGTTCGAGTATATCATGCATCGGAAGCTGTACAAACTCGCAGATGAAGGCTCAGGATCAGACTTGAAAGTAGAGGTTTATGCATCTTTTGGAGGACTTCAAATGATGTTGAAGGGAGATCCCCTCCACTGTGTCAAATTCAGGTGTGTGGTGGCAGAGAGATTGAAAATGGGGGTTGGGGGTTCGTTGGAGTATGTATCCGAGAATTACTTGATGTGCATTAGCCATAAACGCAACAATAAGCACCACCAGTTGCAGACCGTTGAGCTTAAGGTGGCTATGGATTGCGATGGGTGCGAGCTTAAAGTGAAGAAAGCTCTGTCTTCCTTACGAGGAGTGAAATCAGTGAAGATAAACAGAAAGCAGCTGAAGGTGACAGTGACAGGGTATGTGGAAGCAAGCAAAGTGTTGAAGAAGGCAAAGTCGACAGGGAAAAAGGCAGAGATATGGCCATATGTGCCCTACAATTTAGTGAAGCATCCCTACGCTGCCCCAGCTTATGATAAGAAGGCCCCTCCTGGGTATGTCAGAAATGTAGAGGACAATGCTGTGGCCTCCTCTGTTGTCAAGTTTGAAGACCCTTCCTTTGTCACCATGTTCAGTGATGATAACCCTAATGCCTGCTCCATCATGTAG 873 45.02 MAELLFDDIFKVKCVNPDVSRIEARSEKLSMYMLLDVNTEIYPIDEGDKILMVLSPTLNYDGAPVTSYSGQEGKKSLADKFEYIMHRKLYKLADEGSGSDLKVEVYASFGGLQMMLKGDPLHCVKFRCVVAERLKMGVGGSLEYVSENYLMCISHKRNNKHHQLQTVELKVAMDCDGCELKVKKALSSLRGVKSVKINRKQLKVTVTGYVEASKVLKKAKSTGKKAEIWPYVPYNLVKHPYAAPAYDKKAPPGYVRNVEDNAVASSVVKFEDPSFVTMFSDDNPNACSIM 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4274350 4277037 + CmoCh04G008550.1 Cmo04g00855 379830

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00855 290 CDD HMA 168 227 IPR006121 GO:0046872
Cmo04g00855 290 SUPERFAMILY Nucleic acid-binding proteins 3 123 IPR012340 -
Cmo04g00855 290 Gene3D - 6 131 IPR012340 -
Cmo04g00855 290 Pfam RNA polymerase Rpb8 7 127 IPR005570 GO:0006351
Cmo04g00855 290 Pfam Heavy-metal-associated domain 170 225 IPR006121 GO:0046872
Cmo04g00855 290 Gene3D - 162 228 - -
Cmo04g00855 290 SUPERFAMILY HMA, heavy metal-associated domain 163 230 IPR036163 GO:0046872
Cmo04g00855 290 PANTHER - 138 290 - -
Cmo04g00855 290 SMART rpol8neu 2 133 IPR005570 GO:0006351
Cmo04g00855 290 ProSiteProfiles Heavy-metal-associated domain profile. 173 228 IPR006121 GO:0046872
Cmo04g00855 290 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 138 290 IPR045181 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00855 - - - aprc:113872880 233.802
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00855 Cmo-Chr4:4274350 Cmo04g02197 Cmo-Chr4:16308150 1.62E-53 dispersed
Cmo06g01689 Cmo-Chr6:11648477 Cmo04g00855 Cmo-Chr4:4274350 4.08E-48 dispersed
Cmo15g00750 Cmo-Chr15:3674525 Cmo04g00855 Cmo-Chr4:4274350 2.94E-48 dispersed
Cmo16g00737 Cmo-Chr16:3680387 Cmo04g00855 Cmo-Chr4:4274350 4.15E-82 wgd
Cmo03g00829 Cmo-Chr3:6638084 Cmo04g00855 Cmo-Chr4:4274350 2.06E-77 wgd
Cmo04g00855 Cmo-Chr4:4274350 Cmo07g00522 Cmo-Chr7:2393972 7.47E-77 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g874 . . . . Bpe15g00448 . . . Cmo04g00855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe06g00067 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi06g00688 . . Cme02g00903
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0051470 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00855 Cmo_Chr04 FPKM 2.280563 1.721996 9.101675 7.200875 19.547789 21.812742 22.028173 5.280653 6.48351 6.952832