Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00869 ATGATGGTGGAGTTCCATGGAGAAATCCCAGAAGACTCTCACGATGGAGACGAAGAACAGGAAGAGGAAATTAGCTACGATGATCTTAAGAAACGAATGTGGAAAGACAGACAGAGGTTGAAGAAGATGAAGGAGAACCGTGATCATGAAGAGTTTGAATGGGCGGCCAGAGAAGAAGCTTCTCGCCGGAAGAAAATGTCCAGAGCTCAAGATTCGATTCTCAAGTACATGGATAAGATAATGGAGTCTTGTAAGGCACAAGGGTTTGTTTACGGGATCGTGCCGGAAAAGGGTAAACCGATCACCGGCTCTTCTGAGAGCCTCCGTGACTGGTGGCAGGACAAGGTTCGGTTTGAACAGGATGCTCCACTGAACATCGCGAATTTACTTCCGAGAGTGATCGAAGAAGCGGGGCTCGATACCAAATCGTTTCTGCACCTACTCCAAGAATTGCAGGACACGACTTTAGGGTCGATTCTGTCGGCTCTGATGCAGCACTGTATTCCGCCGCAGAGGAAATTCCCATTGGACAAAGGTCTGGCGCCGCCTTGGTGGCCGACGGGAAAGGAGCTTTGGTGGGGCGAACAAGGCGTCGCCGGTGGGCAGGGCGTTCCACCATATAAAAAGCCTCATGATCTCAAGAAGTCCTGGAAAATCAGTGTCCTTGCGGCGGTGATTAAACACATGTCTCTTGATTTGGACAACATGAGGAAATTGGTTCGACAATCGAAGAATTTACAGGCGAAAATGACGGCGAAAGAGACGATTACTTGGACTAAGGTCGTGAATCAAGAAGAAGCTCTCTTGCAATTGACCAAAAACAGCCTCAAAATAACATCCGACGAAGAAGATCAAGAACAACACCACCAAAACAGAGGACCCGAAAACAGGGCAGAACAAGGCACCGGCGGGATTATTACGAAACGGAAGTGCGAATTCGAACGAGAAGCCACAGCTGATTCAGCGGTGTATGCTTGCCAGAACGAATGGTGCCCACAGAGCGAGGCGCCAAAGGGGTTCGCCGACAAGAACGCGAGAACAGAGCACGAGACGCAGTGCGTTTACAGAGCCGACGGCGTGGGGCAGTTTTCTAACGAGCAGTCGATCGACACGCATTTGATGAGCGTGGTGGAGTGGATGAGCTGGGAGCTGTCGAGGGCAGAGCCGAGCAGCAGCGAGTCGAGGATCGATGACGGCGGATATGGGTCGGGTAGCAGCACAGTGGATGGCAGTGGGTATTGGAAGGGCAGCATCGGAGAGGTAGGGGTGGATGGGTCGGGTAGCAGCACGGTGGAGGATTATGGCAGTGGGTATTGGAAGGGCGGGATTGGAGAGGCAGCGGTGGATGGGTCGGGTAGCAGCACGGTGGATGATTATGGGAGTGGGTTTTGGAAGGGCGGCATCGGAGAGGCAGCAGTGGACGAGGCGTTTGAGATGCATAGAGAGAGTATGGATTTGAATGCGAGTCCGGCGGCGGACGATTTGCAATGCCAACAAGATGCAACTTCGATTTGGGATTTGAGATATGAATGGAGTGAAGAGTGA 1545 51.97 MMVEFHGEIPEDSHDGDEEQEEEISYDDLKKRMWKDRQRLKKMKENRDHEEFEWAAREEASRRKKMSRAQDSILKYMDKIMESCKAQGFVYGIVPEKGKPITGSSESLRDWWQDKVRFEQDAPLNIANLLPRVIEEAGLDTKSFLHLLQELQDTTLGSILSALMQHCIPPQRKFPLDKGLAPPWWPTGKELWWGEQGVAGGQGVPPYKKPHDLKKSWKISVLAAVIKHMSLDLDNMRKLVRQSKNLQAKMTAKETITWTKVVNQEEALLQLTKNSLKITSDEEDQEQHHQNRGPENRAEQGTGGIITKRKCEFEREATADSAVYACQNEWCPQSEAPKGFADKNARTEHETQCVYRADGVGQFSNEQSIDTHLMSVVEWMSWELSRAEPSSSESRIDDGGYGSGSSTVDGSGYWKGSIGEVGVDGSGSSTVEDYGSGYWKGGIGEAAVDGSGSSTVDDYGSGFWKGGIGEAAVDEAFEMHRESMDLNASPAADDLQCQQDATSIWDLRYEWSEE 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4343817 4345361 - CmoCh04G008690.1 Cmo04g00869 379844

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00869 514 Pfam Ethylene insensitive 3 27 266 IPR006957 GO:0005634
Cmo04g00869 514 MobiDBLite consensus disorder prediction 1 25 - -
Cmo04g00869 514 MobiDBLite consensus disorder prediction 279 295 - -
Cmo04g00869 514 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 13 510 IPR006957 GO:0005634
Cmo04g00869 514 Gene3D - 138 276 IPR023278 GO:0003700|GO:0005634
Cmo04g00869 514 Gene3D - 55 133 IPR023278 GO:0003700|GO:0005634
Cmo04g00869 514 Coils Coil 26 46 - -
Cmo04g00869 514 MobiDBLite consensus disorder prediction 279 304 - -
Cmo04g00869 514 PANTHER ETHYLENE INSENSITIVE 3-LIKE 5 PROTEIN 13 510 - -
Cmo04g00869 514 SUPERFAMILY DNA-binding domain of EIN3-like 145 269 IPR023278 GO:0003700|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00869 K14514 EIN3; ethylene-insensitive protein 3 - csv:116406094 669.077
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00869 Cmo-Chr4:4343817 Cmo10g01026 Cmo-Chr10:5388347 8.53E-110 dispersed
Cmo16g00750 Cmo-Chr16:3765531 Cmo04g00869 Cmo-Chr4:4343817 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo11g00819 . 2 601 EIL Transcription Factor Family AT2G27050 62.4 1.4e-197 686.8
Cmo10g01026 . 2 619 EIL Transcription Factor Family AT2G27050 59.5 6.2e-190 661.4
Cmo15g00557 . 1 508 EIL Transcription Factor Family AT2G27050 59.7 7.9e-161 564.7
Cmo04g02607 . 68 584 EIL Transcription Factor Family AT2G27050 58.3 8.7e-160 561.2
Cmo11g00844 . 66 366 EIL Transcription Factor Family AT2G27050 57.8 8.6e-91 332.0
Cmo11g00844 . 73 327 EIL Transcription Factor Family AT5G21120 51.9 2.5e-73 273.9
Cmo11g00844 . 58 573 EIL Transcription Factor Family AT1G73730 53.9 3.2e-135 479.6
Cmo11g00819 . 36 334 EIL Transcription Factor Family AT1G73730 62.9 3.4e-105 379.8
Cmo10g01026 . 36 334 EIL Transcription Factor Family AT1G73730 62.2 8.4e-104 375.2
Cmo04g02607 . 100 363 EIL Transcription Factor Family AT1G73730 67.7 5.7e-100 362.5
Cmo15g00557 . 40 335 EIL Transcription Factor Family AT1G73730 60.4 2.2e-99 360.5
Cmo16g00750 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 2.6e-76 283.9
Cmo04g00869 . 21 270 EIL Transcription Factor Family AT1G73730 54.5 7.0e-74 275.8
Cmo10g01026 . 3 619 EIL Transcription Factor Family AT3G20770 62.3 1.0e-206 717.2
Cmo11g00819 . 3 601 EIL Transcription Factor Family AT3G20770 61.2 2.5e-205 712.6
Cmo04g02607 . 67 670 EIL Transcription Factor Family AT3G20770 51.4 4.5e-162 568.9
Cmo15g00557 . 7 512 EIL Transcription Factor Family AT3G20770 59.4 3.6e-159 559.3
Cmo11g00844 . 66 326 EIL Transcription Factor Family AT3G20770 64.4 6.4e-92 335.9
Cmo11g00844 . 83 288 EIL Transcription Factor Family AT5G65100 59.3 2.1e-70 264.2
Cmo16g00750 . 19 349 EIL Transcription Factor Family AT5G10120 59.6 1.0e-105 381.3
Cmo04g00869 . 18 355 EIL Transcription Factor Family AT5G10120 57.6 5.1e-102 369.0
Cmo11g00844 . 75 290 EIL Transcription Factor Family AT5G10120 57.9 5.5e-72 269.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012054 0 1 0 0 0 1 2 2 1 1 1 1 2 1 1 2 1 0 2 1 1 2 0 0 1 1 1 2 1 0 29
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9574 PF04873 EIN3 4.50E-106 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00869 Cmo_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 6.71047 7.403409 8.288598