Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00875 ATGTTCTCTCTCTTCCTCCTCCCTCTCTTCTTCCACTTCCCATCTGTTTCTCCGCCCAAACTCCGCCCCGATTACTACGCCGAGTCATGCCCTCACGCGGAATCCATCGTCCGGACTGTGATGCACAAAGCTCTGATCAGTGAGCCTCGAAGTGTTGCCTCTGTTATGCGCTTCCAATTTCATGATTGCTTTGTTAATGGCTGTGATGCTTCTATGTTGCTGGATGATACGCCGACGATGCTTGGAGAGAAACTCTCTCTCTCGAACATTAATTCGCTTAGATCTTATGAAGTTGTTGATGAAGTGAAGGAGGCGTTGGAGAAGGCCTGTCCTGGAATCGTCTCGTGTGCAGATATCATTATCATGGCGTCTAGAGATGCCGTTGCTCTAACAGGCGGCCCCAACTGGACAGTGAGATTAGGTAGGCTGGACAGCTTAACAGCAAGCCAAGAGGACTCAAACCAGATCATGCCAAGTCCAAGAGCCAATGCAAGCTCTCTCATTGACCTCTTCAACAAATACAACTTATCTGTTAAAGATCTGGTTTCTCTGTCAGGTTCCCACTCCATCGGCCAAGGCCGATGTTTCTCAATCATGTTTCGGCTCTACAACCAGTCTGGTACTGGGAGGCCAGACCCGGCCATCGAGCCGGGCTTCAGAGAAGAGCTCTTTAAGCAATGCCCTCAAGGTGGGGACGAAAATGTCACAATGAACCTTGACTCTACACCTTATATTTTTGACAATCGGTACTTCAAGGACTTGGTTGGTGGGAGAGGGTTCTTGAATTCTGATGAAACTCTCTATACATCTGCTGCAACTCGAAGGTATGTGAGGTACTTCAGCAAAAACCAAAGTGCGTTTTTTAACGCATTCGTGGAGGGTATGCTGAAGATGGGTGACTTGCAGTCTGGCCGCCCGGGGGAGGTTAGAAGGAATTGTAGAGTAGCCAATGGCCAGTCTGTGATCATATAA 972 48.56 MFSLFLLPLFFHFPSVSPPKLRPDYYAESCPHAESIVRTVMHKALISEPRSVASVMRFQFHDCFVNGCDASMLLDDTPTMLGEKLSLSNINSLRSYEVVDEVKEALEKACPGIVSCADIIIMASRDAVALTGGPNWTVRLGRLDSLTASQEDSNQIMPSPRANASSLIDLFNKYNLSVKDLVSLSGSHSIGQGRCFSIMFRLYNQSGTGRPDPAIEPGFREELFKQCPQGGDENVTMNLDSTPYIFDNRYFKDLVGGRGFLNSDETLYTSAATRRYVRYFSKNQSAFFNAFVEGMLKMGDLQSGRPGEVRRNCRVANGQSVII 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4386702 4389863 + CmoCh04G008750.1 Cmo04g00875 379850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00875 323 Gene3D - 24 317 - -
Cmo04g00875 323 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 94 107 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 113 123 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 132 147 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 179 191 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 Gene3D Peroxidase, domain 2 158 298 - -
Cmo04g00875 323 ProSitePatterns Peroxidases proximal heme-ligand signature. 180 190 IPR019793 -
Cmo04g00875 323 PANTHER PEROXIDASE 17 13 318 - -
Cmo04g00875 323 CDD secretory_peroxidase 20 315 IPR033905 GO:0004601|GO:0042744
Cmo04g00875 323 PANTHER PEROXIDASE 72-RELATED 13 318 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 Pfam Peroxidase 37 282 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 SUPERFAMILY Heme-dependent peroxidases 21 317 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Haem peroxidase superfamily signature 114 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Haem peroxidase superfamily signature 132 144 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Haem peroxidase superfamily signature 180 195 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 PRINTS Haem peroxidase superfamily signature 239 254 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo04g00875 323 ProSiteProfiles Plant heme peroxidase family profile. 20 317 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00875 Cmo-Chr4:4386702 Cmo02g01253 Cmo-Chr2:7506324 2.76E-94 dispersed
Cmo04g00875 Cmo-Chr4:4386702 Cmo03g00743 Cmo-Chr3:6291134 6.42E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00875 K00430 - csv:116406089 554.288