Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00876 ATGAAAATGATGCTAGTTAGGATGGGAGAGCTCTATCTTACAATTCTACTACTGGCTTGCTTTCATAATTTTGCGCTGTCTGATTATCAAGGTGATGCTCTCTTTTCACTGAGACGCGCATTGAATGCAACAGAAAATCAGCTCACAGATTGGAACCCAAATCAAGTCAATCCATGTACTTGGACCAGTGTTATATGTAATGGAAACAATGTGATCTCTGTATCCTTGTCAGCTATGGGCTTTACTGGAACTTTGTCCCCGAAAATTGGAGTTCTCAAATCACTTTCAACGCTGATTTTGCAGGGGAATCACATAACTGGAGAGATACCGAAGGATTTTGGAAACTTGACAAATTTGGTCAGTTTGGATTTGGGAAATAACAGCCTAACTGGCCATATACCATCGTCCCTGGGTAATCTTCAGAAACTACAGTTCCTAACTCTGAGTCATAATCGTCTAACTGGGACTATTCCTGAGTCACTCTCAAGCATTCCTAGCTTGATTAGTCTGCTTCTTGACTCAAATGATCTCACGGGCCCAATTCCGGAGCAGTTATTTCAAGCTTCAAAATTCAACTTTTCTGGAAACAAGTTAGATTGTAGCGGGAAGTTTCTGCATGCCTGTGCTTCAGACAGTTCAAACTCAGGTTCTTCGAACAAACCTAAGGTTGGCCTTATTGTTGGAATTATAGCTGGGTTTACTGTTGCTCTCCTTTTGGTCGGTGTATTATTTTTCTTGTGCAAGGGTAGATATAAAGGCTACAAGCGCGAAGAGTTCGTAGATGTTGCAGGTGAAGTTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTTTATGGAGAGAACTGCAGCATGCTACAGACAACTTTAGTGAGAAAAATGTTTTAGGACAAGGAGGCTTTGGAAAGGTGTACAAAGGGGTGTTTGCCGATGGCACCAAAGTTGCAGTGAAACGGTTGACTGATTATGAAAGTCCAGGGGGAGATGCTGCTTTTCAGCGTGAAGTTGAGATGATTAGCGTAGCTGTTCATAGAAATCTGTTGCGGCTGATTGGGTTCTGTACGACTCAGACAGAACGCCTATTGGTGTATCCCTTTATGCAGAATTTGAGTGTTGCCTACCGTCTTCGAGAACTTAAGCCTGGGGAGGCTGCTTTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGCACTGCTCGTGGTTTAGAGTATCTTCATGAACATTGCAATCCAAAGATTATTCATCGAGATGTTAAGGCAGCCAATGTATTGCTTGATGAAGATTTTGAAGCAGTTGTTGGCGATTTTGGCTTAGCAAAGTTGGTTGACGTTAGGAAGACTAATGTCACTACTCAAGTTCGAGGGACAATGGGCCACATAGCACCGGAGTACTTATCAACTGGAAAATCATCAGAAAGGACTGATGTTTTTGGTTATGGTATCATGCTTTTAGAACTTGTCACAGGGCAACGTGCAATCGACTTCTCACGCTTAGAAGAAGAAGATGATGTTTTACTACTCGACCATGTTAAGAAACTAGAAAGAGAAAAGCGACTCAATGCTATCGTAGATCGGAATCTAAGTAACTACAACATTCAAGAGGTGGAGATGATGATCCAAGTTGCATTGCTTTGCACACAGCCGTGTTCGGATGACCGTCCAGCAATGTCGCAAGTCGTTCGAATGCTCGAAGGAGAGGGATTGGCAGAGAGGTGGGAAGAATGGCAGCATTTGGAGGTTACTCGCAGACAAGAGTATGAGAGACTGCAGAGAAGATTCGAATGGGGAGAAGATTCAATTCATAGACAGGATGCAATCGAATTGTCTGTCAAGAAATCCTTGCCTTCCCATCCTCCGTTCTGTAAATTCTCAGTGGCTTCTGCTCTCTTTCATTTCTTGGCTTTTGCATCTTCCTATAATCTCGTGTCCTCCATTTTAACCTTTGCTGTATCTGAACTCTGTAATCCAGCCATATCAACAGTCCTCATATTCACGTCTGCCATAGCATTTGTCATATATAGCAATGACTCGATTAATCTTTTTTGCTTGGATTTCATGACGTTGCCCATGAAAATGATGTTAGTGAAGATGGGAAAACTCTATCTTACAGCTCTAGTTCTGGCCCTCTTTCATTATATTGCACTGTCTGATTTTCAAGGTCAGGCACTCATTGAATTAAAGAAAGCATTGAATGCAACAGGGAGTCAGCTCACAAGTTGGAACGCAGATCATATCAATCCATGCAGTAGTTGGTCCAATATTATATGTAACGGAAACAATGTGACTAAGATATTATTGTCAACAATGGGATTGACTGGAACCCTGTCTCCGAGTATTGTTGTTCTAAAATCTCTTTCAACTCTGAACTTGAAGGGAAATTACATAACTGGAGAGATACCAGAGGATTTTGGAAACCTGACAAATTTGGTCACCTTGGACCTGGAAAATAACAGCCTAACTGGTCGAATACCATCATCCCTTGGTAATCTTAAGAAACTACAGTTCCTAACTCTGAGTCAAAATCATCTCGCTGGGACTATTCCTGAATCATTTTCGACCCTTCCTAGCTTGATCAATCTTTTTCTTGATTCAAATAATCTCAATGGCCAAATTCCGGAGCAGTTATTTCAAGTTTCAAAATTCAACTTTTCGGGAAATAGGTTGAATTGTGGCAAAAAATTTCACCGTTCCTGTGCTTCAGATAGTACAAACTCAGGTGCTTCCAATAAGTCAAAGGTTGGCCTTATAGCTGGACTTATTGCTGGGCTAATGCTTGCTCTTCTTTTGGTCGGAGTATTGTTTTTCTTGTGCAAGTATAGATATAAAGGCAACAAGGGCGAAGTCTTTGTAGATGTTCCAGGTGAAATTGATCGAAGAATTGCATTTGGTCAGCTGAAAAGATTTCCATGGAGGGAATTGCAGCTAGCTACAGAAGACTTCAGTGACAAAAATGTTATAGGACAAGGAGGCTTTGGAAGGGTTTACAAAGGGGTGCTTACTGATGGCACCAAGGTTGCAGTGAAACAGTCAACTAATTATGAAAGCCTTGGGGGAGATGCTGCTTTTCTACAGGAAGTTGAGATGATTAGTGTAGCTGTTCATAGAAATCTATTGCGGCTGATTGGGTTCTGTACAACTGAGACCGAACGCTTATTGGTATATCCCTATATGCAGAACTTGAGTGTTGCCTACCATCTTCGAGAAATTAAGCCTGGGGAACGTATTCTAGATTGGCCTACTCGAAAACGTGTGGCATTGGGTGCAGCTCGTGGTTTAGGATATCTTCATGAACATTGCAATCCAAAGATTATTCACCGAGATGTTAAGGCTGCTAATGTATTGCTTGATGATGATTTTGAAGCTGTTGTGTGCGATTTTGGCCTAGCAAAGTTGGTTGATGTTAGGAAGACTAATGTCACGACTCAAGTTCGGGGGACAGCTGGCCACATAGCACCGGAGTACTTATCCACCGGAAAATCATCAGAAAAGACTGATGTTTTTGGCTATGGCATTATGCTTTTAGAACTTGTTACAGGGCAAAGAGCAATGGATTTATCTCGCTTGGAAGGAGATGATGTTTTACTGCTCGACCATGTCAAAAAATTGGTAAGGGAGAAGCGACTCACTGCTATTGTCGACGAAAACCTGAATAACTATGATATTAGAGAGGTGGAAATGATGACCCAAGTAGCGCTACTGTGTACGCAGCAATCTTCGGTTGACCGACCGACAATGTCACAGGTCACTCGGATGCTGGAAGGCGAGGGGCTTGCAGAGAGGTGGGAAGAATGGCAGCATTTAGAGGTGACTCGCAAACAAGACTTTGAGAGAATACTGAGAAGATTTGCGTTGGGGGATGATTCCATCTATAAACAGGAACCTATCCAGTTGTCTGGTGGAAGATGA 3906 42.19 MKMMLVRMGELYLTILLLACFHNFALSDYQGDALFSLRRALNATENQLTDWNPNQVNPCTWTSVICNGNNVISVSLSAMGFTGTLSPKIGVLKSLSTLILQGNHITGEIPKDFGNLTNLVSLDLGNNSLTGHIPSSLGNLQKLQFLTLSHNRLTGTIPESLSSIPSLISLLLDSNDLTGPIPEQLFQASKFNFSGNKLDCSGKFLHACASDSSNSGSSNKPKVGLIVGIIAGFTVALLLVGVLFFLCKGRYKGYKREEFVDVAGEVDRRIAFGQLKRFLWRELQHATDNFSEKNVLGQGGFGKVYKGVFADGTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLRLIGFCTTQTERLLVYPFMQNLSVAYRLRELKPGEAALDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDVRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLNAIVDRNLSNYNIQEVEMMIQVALLCTQPCSDDRPAMSQVVRMLEGEGLAERWEEWQHLEVTRRQEYERLQRRFEWGEDSIHRQDAIELSVKKSLPSHPPFCKFSVASALFHFLAFASSYNLVSSILTFAVSELCNPAISTVLIFTSAIAFVIYSNDSINLFCLDFMTLPMKMMLVKMGKLYLTALVLALFHYIALSDFQGQALIELKKALNATGSQLTSWNADHINPCSSWSNIICNGNNVTKILLSTMGLTGTLSPSIVVLKSLSTLNLKGNYITGEIPEDFGNLTNLVTLDLENNSLTGRIPSSLGNLKKLQFLTLSQNHLAGTIPESFSTLPSLINLFLDSNNLNGQIPEQLFQVSKFNFSGNRLNCGKKFHRSCASDSTNSGASNKSKVGLIAGLIAGLMLALLLVGVLFFLCKYRYKGNKGEVFVDVPGEIDRRIAFGQLKRFPWRELQLATEDFSDKNVIGQGGFGRVYKGVLTDGTKVAVKQSTNYESLGGDAAFLQEVEMISVAVHRNLLRLIGFCTTETERLLVYPYMQNLSVAYHLREIKPGERILDWPTRKRVALGAARGLGYLHEHCNPKIIHRDVKAANVLLDDDFEAVVCDFGLAKLVDVRKTNVTTQVRGTAGHIAPEYLSTGKSSEKTDVFGYGIMLLELVTGQRAMDLSRLEGDDVLLLDHVKKLVREKRLTAIVDENLNNYDIREVEMMTQVALLCTQQSSVDRPTMSQVTRMLEGEGLAERWEEWQHLEVTRKQDFERILRRFALGDDSIYKQEPIQLSGGR 1301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4390657 4411268 - CmoCh04G008760.1 Cmo04g00876 379851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00876 1301 SMART LRR_typ_2 164 188 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 140 163 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 92 115 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 854 878 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 806 830 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 782 805 IPR003591 -
Cmo04g00876 1301 SMART LRR_typ_2 116 139 IPR003591 -
Cmo04g00876 1301 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Cmo04g00876 1301 Pfam Leucine rich repeat N-terminal domain 719 757 IPR013210 -
Cmo04g00876 1301 ProSiteProfiles Protein kinase domain profile. 980 1257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 ProSiteProfiles Protein kinase domain profile. 290 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 SUPERFAMILY L domain-like 30 201 - -
Cmo04g00876 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1103 1115 IPR008271 GO:0004672|GO:0006468
Cmo04g00876 1301 Pfam Protein kinase domain 981 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 Pfam Protein kinase domain 291 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 SUPERFAMILY L domain-like 719 889 - -
Cmo04g00876 1301 Gene3D Transferase(Phosphotransferase) domain 1 367 583 - -
Cmo04g00876 1301 Gene3D Transferase(Phosphotransferase) domain 1 1057 1272 - -
Cmo04g00876 1301 ProSitePatterns Protein kinases ATP-binding region signature. 986 1008 IPR017441 GO:0005524
Cmo04g00876 1301 SUPERFAMILY Protein kinase-like (PK-like) 270 564 IPR011009 -
Cmo04g00876 1301 SUPERFAMILY Protein kinase-like (PK-like) 960 1253 IPR011009 -
Cmo04g00876 1301 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cmo04g00876 1301 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cmo04g00876 1301 Gene3D Phosphorylase Kinase; domain 1 949 1056 - -
Cmo04g00876 1301 PANTHER LRR RECEPTOR KINASE SERK2 12 609 - -
Cmo04g00876 1301 PANTHER LRR RECEPTOR KINASE SERK2 702 1301 - -
Cmo04g00876 1301 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Cmo04g00876 1301 Pfam Leucine rich repeat 784 843 IPR001611 GO:0005515
Cmo04g00876 1301 SMART serkin_6 980 1252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 SMART serkin_6 290 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00876 1301 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Cmo04g00876 1301 Gene3D Ribonuclease Inhibitor 717 900 IPR032675 -
Cmo04g00876 1301 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 609 - -
Cmo04g00876 1301 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 702 1301 - -
Cmo04g00876 1301 Gene3D Ribonuclease Inhibitor 28 223 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00876 Cmo-Chr4:4390657 Cmo20g01026 Cmo-Chr20:8810084 0 dispersed
Cmo16g00762 Cmo-Chr16:3822870 Cmo04g00876 Cmo-Chr4:4390657 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74253 PF00069 Pkinase 7.50E-42 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00876 - - cmax:111479289 1178.31