Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00877 ATGGCGGGTTGTTTTAGTTTCTCTGCCACCTTGGACTCGTGTTATCGGTACTATTTCTCTAGGGCAGGCCTTAAATCCATCACCACCGATTTTGGCGATGGGACGATCATCCACTGTTGGGCGCCCAAAACCAGGAGAGAATCGAAACCTAATTTATTGCTCCTCCATGGATTTGGAGCCAACGCAATGTGGCAATGGAACGAATTCATATCACGGTTGATCCGATTCTTCAATGTCTACGTTCCTGACCTACTTTTCTTCGGTAATTCGTATACGACTCGGCCGGAGAGGTCAGTCTCGTTTCAGGCTCTCTGTATGATGCATCTAATGGATTCGTTTGAAGTTCGGACGATGAATGTCGTTGGAATTAGCTACGGTGGCTTCGTAACGTATAGTATGGCCGATCAATTTCCGGAGCGATTGGAGAGATTGGTGCTCTGTTGCGCCGGAGTTTGCTTGGAAGAGAGGGATATGGCGGCCGGGATGTTCGTCGTGAAGAACGTCGATGAGGCCGCTAGTATTTTGCTACCTCAAACACCGGCGAAGCTCAAGGAACTTCTCCGCCTCACCTTCGTCAAGCCTGCTCGAATTCTACCCACTTGTATAATGGACGATTTCATCGTTGTGATGTGCACAGAATTCAAGCAAGAGAAAGAAGAGTTGATTAAAGAAATACTTAAAGACAGGAACCTTTCTACTCTTCCGAAGATCAACAAGCCTACGCTGATACTATGGGGAGAACAAGACAGAGTATTTCCTTTGGAGTTGGCACACAGATTAAAAAGGCACTTGGGGGAAAACGCAGAGTTAGCTGTTGTGAAAGACGCAGGGCATGCGATCAATGCAGAGAAGCCAAAAGAGATGTACAAACACATAAAGGCTTTTCTTGTCACCCGCCCCAACCTTTCTCAATCGAACTCATCTATTTATAACTTTTGA 939 46.33 MAGCFSFSATLDSCYRYYFSRAGLKSITTDFGDGTIIHCWAPKTRRESKPNLLLLHGFGANAMWQWNEFISRLIRFFNVYVPDLLFFGNSYTTRPERSVSFQALCMMHLMDSFEVRTMNVVGISYGGFVTYSMADQFPERLERLVLCCAGVCLEERDMAAGMFVVKNVDEAASILLPQTPAKLKELLRLTFVKPARILPTCIMDDFIVVMCTEFKQEKEELIKEILKDRNLSTLPKINKPTLILWGEQDRVFPLELAHRLKRHLGENAELAVVKDAGHAINAEKPKEMYKHIKAFLVTRPNLSQSNSSIYNF 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4412637 4415422 + CmoCh04G008770.1 Cmo04g00877 379852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00877 312 Gene3D alpha/beta hydrolase 12 299 IPR029058 -
Cmo04g00877 312 PANTHER SI:DKEY-122A22.2 3 304 - -
Cmo04g00877 312 Pfam Alpha/beta hydrolase family 52 288 IPR000073 -
Cmo04g00877 312 SUPERFAMILY alpha/beta-Hydrolases 25 296 IPR029058 -
Cmo04g00877 312 PRINTS Alpha/beta hydrolase fold signature 76 91 IPR000073 -
Cmo04g00877 312 PRINTS Alpha/beta hydrolase fold signature 120 133 IPR000073 -
Cmo04g00877 312 PRINTS Alpha/beta hydrolase fold signature 134 147 IPR000073 -
Cmo04g00877 312 PRINTS Alpha/beta hydrolase fold signature 241 255 IPR000073 -
Cmo04g00877 312 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 3 304 - -
Cmo04g00877 312 PRINTS Epoxide hydrolase signature 120 133 IPR000639 GO:0003824
Cmo04g00877 312 PRINTS Epoxide hydrolase signature 239 255 IPR000639 GO:0003824
Cmo04g00877 312 PRINTS Epoxide hydrolase signature 273 295 IPR000639 GO:0003824
Cmo04g00877 312 PRINTS Epoxide hydrolase signature 76 91 IPR000639 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00877 - - - csv:101220773 535.413
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00877 Cmo16g00763 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00877 Cmo-Chr4:4412637 Cmo05g00523 Cmo-Chr5:2528091 9.46E-120 dispersed
Cmo16g00763 Cmo-Chr16:3834609 Cmo04g00877 Cmo-Chr4:4412637 1.29E-147 wgd
Cmo03g00853 Cmo-Chr3:6716588 Cmo04g00877 Cmo-Chr4:4412637 9.89E-149 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g977 Blo04g00917 . . . Bpe15g00428 . . . Cmo04g00877 Cmo16g00763 . . . . . . . . . . . . . . . . . . . . . Cone8ag0812 . . . . . Chy07g01245 . . . . . . . Bma03g00989 . Sed05g3619 . . Cma16g00706 . . . . Cpe14g00603 Bhi10g02010 Tan05g1308 Cmetu07g0234 . Hepe08g1015 . . . . . . . . . Lsi07g00150 Csa04g00453 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002597 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 2 2 0 3 2 2 2 2 1 2 2 2 4 2 0 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00877 Cmo_Chr04 FPKM 4.953792 5.632088 7.375467 6.654624 11.836175 11.840178 11.982283 8.736308 9.527718 8.92614