Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00894 ATGGAGTTCGAGGATCACGACGAAGAAGAAGACATGGAAATGGAAGCTCCAACAAACTACGACAAACCACTTCTCCAAACCCCTCCTCCTCCTCCTCCACTTTCCCGCCTCAACAAAACCCCATCTCCGCTCCACTCCTCCCCCCCTCCTCCCCCCCTCTACAAAGAGTGCTTAAAAAACCACGCCGTCTCCATCGGTGGCCACTCCCTCGACGGCTGCGGCGAGTTCATGCCCGCCGGCCCAAACGGCTCTCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAAGACATTACCACCACCAACGACGACAACGGAGAATCACCACCGTTCATCTTATCCAACCCACCACCAACCGCCCAGTTCGTTCCCTACTGGCGTGCTCCAGCTGGCTACCTCCACGTGGCACCCCAACGACGAATGCTGGCGCTCCCGTCGCCTTCAAGTGGAGACGGCGGATGCAGAAAGAGGGTAAGGACAAAATTCACTGAGGAGCAAAAGGAGAAGATGCTGGTGATGGCGGAGAAGCTGGATTGGCGTATTCAAAAGAACGATGAAGCGGCGGTGATGGAATTCTGCAACGAAATCGGGGTGAAACGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGACTCTGAACACAACAAATTCTCCCGCGGCGAACGGCGACTCCTCTATCGAGGGCTGCCTTTAATCTTTTGGAAAATGAAGAAAATGATAGCACTGGGTTTTGAGGGTTCAGCAAACAAGATTGGTGTTGGGGTTGTGACATTAGATGGCAACATTTTGTCAAACCCACGTCACACCTACATTACACCTCCCGGCCATGGCTTTCTTCCTCGTGAAACTGCACATCACCATTTTGAGCACATTCTCCCGTTGATTAAGTCTGCTCTGGAAACTGCAAAAATTACCCCAGAGGATATTGACTGCCTCTGTTACACTAAAGGGCCTGGCATGGGAGCTCCTCTACAAGTTTCTGCTGTTGCTGTGAGGGTTCTTTCTCAGATTTGGAATAAGCCTATTGTTGCTGTTAATCATTGCGTTGCACATATTGAGATGGGAAGGATTGTAACGGGTGCTGATGATCCTGTTGTCTTGTATGTTAGTGGTGGGAATACTCAGGTGATTGCTTATAGTGAAGGAAGGTATAGAATCTTTGGGGAAACTATTGATATTGCCGTTGGAAATTGCTTGGATCGGTTTGCAAGAGTCCTAACGCTATCCAATGACCCAAGTCCTGGATACAATATTGAACAGCTTGCAAAGAAGGGAGAAAAGTTTATTGAACTTCCATATGTAGTTAAAGGGATGGATGTATCATTCAGTGGGATATTAAGTTATATTGAAGCAACTGCTGAGGAGAAACTAAAAAGTAACGAGTGTACTCCTGCTGACTTGTGCTACTCTCTACAGGAAACATTGTTTGCTATGCTTGTGGAAATCACGGAACGAGCCATGGCTCACTGCGACAAGAAAGATGTTCTTATAGTGGGTGGCGTAGGTTGTAATGAGCGCTTGCAAGAGATGATGAGAATAATGTGCTCTGAGCGAGGAGGAAGATTATTTGCAACAGATGACCGTTATTGTATTGATAATGGTGCAATGATTGCATATACTGGTCTTCTTGCTTGGGCACATGGCATGTCAACACCATTGGAGGAAGTAACATTCACCCAACGGTTTCGAACCGATGAAGTACATGCTATATGGAGAGAGAAAAAGGATTCGACTGAGCTCATGGAAGAAGACGTCTAA 1794 47.94 MEFEDHDEEEDMEMEAPTNYDKPLLQTPPPPPPLSRLNKTPSPLHSSPPPPPLYKECLKNHAVSIGGHSLDGCGEFMPAGPNGSLDALKCAACNCHRNFHRKDITTTNDDNGESPPFILSNPPPTAQFVPYWRAPAGYLHVAPQRRMLALPSPSSGDGGCRKRVRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKDSEHNKFSRGERRLLYRGLPLIFWKMKKMIALGFEGSANKIGVGVVTLDGNILSNPRHTYITPPGHGFLPRETAHHHFEHILPLIKSALETAKITPEDIDCLCYTKGPGMGAPLQVSAVAVRVLSQIWNKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFIELPYVVKGMDVSFSGILSYIEATAEEKLKSNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRIMCSERGGRLFATDDRYCIDNGAMIAYTGLLAWAHGMSTPLEEVTFTQRFRTDEVHAIWREKKDSTELMEEDV 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4510277 4515095 - CmoCh04G008940.1 Cmo04g00894 379869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 399 420 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 324 344 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 507 516 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 254 267 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 377 389 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 345 364 IPR017861 -
Cmo04g00894 597 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 247 586 IPR000905 -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 23 53 - -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 1 15 - -
Cmo04g00894 597 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 103 IPR006456 -
Cmo04g00894 597 Gene3D - 375 537 - -
Cmo04g00894 597 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Cmo04g00894 597 CDD NBD_sugar-kinase_HSP70_actin 254 422 - -
Cmo04g00894 597 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 254 550 IPR017861 -
Cmo04g00894 597 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED 247 586 IPR034680 GO:0000408|GO:0002949
Cmo04g00894 597 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [kae1]. 251 584 IPR034680 GO:0000408|GO:0002949
Cmo04g00894 597 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Cmo04g00894 597 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 275 551 IPR000905 -
Cmo04g00894 597 Gene3D - 151 223 - -
Cmo04g00894 597 SUPERFAMILY Homeodomain-like 153 222 IPR009057 -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 1 53 - -
Cmo04g00894 597 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 161 218 IPR006455 -
Cmo04g00894 597 SUPERFAMILY Actin-like ATPase domain 251 551 IPR043129 -
Cmo04g00894 597 Gene3D - 254 555 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00894 Cmo07g00483 CCT
Cmo03g00772 Cmo04g00894 CCT
Cmo03g00772 Cmo04g00894 ECH
Cmo04g00894 Cmo07g00483 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00874 Cmo-Chr3:6821712 Cmo04g00894 Cmo-Chr4:4510277 3.82E-71 dispersed
Cmo04g00894 Cmo-Chr4:4510277 Cmo05g00555 Cmo-Chr5:2677874 6.14E-54 dispersed
Cmo14g02030 Cmo-Chr14:14856031 Cmo04g00894 Cmo-Chr4:4510277 4.89E-27 dispersed
Cmo04g00894 Cmo-Chr4:4510277 Cmo07g00569 Cmo-Chr7:2559410 9.26E-70 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9575 PF00814 TsaD 2.40E-90 CL0108 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00894 K01409 - csv:101218780 679.093