Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00894 ATGGAGTTCGAGGATCACGACGAAGAAGAAGACATGGAAATGGAAGCTCCAACAAACTACGACAAACCACTTCTCCAAACCCCTCCTCCTCCTCCTCCACTTTCCCGCCTCAACAAAACCCCATCTCCGCTCCACTCCTCCCCCCCTCCTCCCCCCCTCTACAAAGAGTGCTTAAAAAACCACGCCGTCTCCATCGGTGGCCACTCCCTCGACGGCTGCGGCGAGTTCATGCCCGCCGGCCCAAACGGCTCTCTCGACGCACTCAAATGCGCCGCCTGCAACTGCCACCGCAACTTCCACCGCAAAGACATTACCACCACCAACGACGACAACGGAGAATCACCACCGTTCATCTTATCCAACCCACCACCAACCGCCCAGTTCGTTCCCTACTGGCGTGCTCCAGCTGGCTACCTCCACGTGGCACCCCAACGACGAATGCTGGCGCTCCCGTCGCCTTCAAGTGGAGACGGCGGATGCAGAAAGAGGGTAAGGACAAAATTCACTGAGGAGCAAAAGGAGAAGATGCTGGTGATGGCGGAGAAGCTGGATTGGCGTATTCAAAAGAACGATGAAGCGGCGGTGATGGAATTCTGCAACGAAATCGGGGTGAAACGCCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAAGGACTCTGAACACAACAAATTCTCCCGCGGCGAACGGCGACTCCTCTATCGAGGGCTGCCTTTAATCTTTTGGAAAATGAAGAAAATGATAGCACTGGGTTTTGAGGGTTCAGCAAACAAGATTGGTGTTGGGGTTGTGACATTAGATGGCAACATTTTGTCAAACCCACGTCACACCTACATTACACCTCCCGGCCATGGCTTTCTTCCTCGTGAAACTGCACATCACCATTTTGAGCACATTCTCCCGTTGATTAAGTCTGCTCTGGAAACTGCAAAAATTACCCCAGAGGATATTGACTGCCTCTGTTACACTAAAGGGCCTGGCATGGGAGCTCCTCTACAAGTTTCTGCTGTTGCTGTGAGGGTTCTTTCTCAGATTTGGAATAAGCCTATTGTTGCTGTTAATCATTGCGTTGCACATATTGAGATGGGAAGGATTGTAACGGGTGCTGATGATCCTGTTGTCTTGTATGTTAGTGGTGGGAATACTCAGGTGATTGCTTATAGTGAAGGAAGGTATAGAATCTTTGGGGAAACTATTGATATTGCCGTTGGAAATTGCTTGGATCGGTTTGCAAGAGTCCTAACGCTATCCAATGACCCAAGTCCTGGATACAATATTGAACAGCTTGCAAAGAAGGGAGAAAAGTTTATTGAACTTCCATATGTAGTTAAAGGGATGGATGTATCATTCAGTGGGATATTAAGTTATATTGAAGCAACTGCTGAGGAGAAACTAAAAAGTAACGAGTGTACTCCTGCTGACTTGTGCTACTCTCTACAGGAAACATTGTTTGCTATGCTTGTGGAAATCACGGAACGAGCCATGGCTCACTGCGACAAGAAAGATGTTCTTATAGTGGGTGGCGTAGGTTGTAATGAGCGCTTGCAAGAGATGATGAGAATAATGTGCTCTGAGCGAGGAGGAAGATTATTTGCAACAGATGACCGTTATTGTATTGATAATGGTGCAATGATTGCATATACTGGTCTTCTTGCTTGGGCACATGGCATGTCAACACCATTGGAGGAAGTAACATTCACCCAACGGTTTCGAACCGATGAAGTACATGCTATATGGAGAGAGAAAAAGGATTCGACTGAGCTCATGGAAGAAGACGTCTAA 1794 47.94 MEFEDHDEEEDMEMEAPTNYDKPLLQTPPPPPPLSRLNKTPSPLHSSPPPPPLYKECLKNHAVSIGGHSLDGCGEFMPAGPNGSLDALKCAACNCHRNFHRKDITTTNDDNGESPPFILSNPPPTAQFVPYWRAPAGYLHVAPQRRMLALPSPSSGDGGCRKRVRTKFTEEQKEKMLVMAEKLDWRIQKNDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRKDSEHNKFSRGERRLLYRGLPLIFWKMKKMIALGFEGSANKIGVGVVTLDGNILSNPRHTYITPPGHGFLPRETAHHHFEHILPLIKSALETAKITPEDIDCLCYTKGPGMGAPLQVSAVAVRVLSQIWNKPIVAVNHCVAHIEMGRIVTGADDPVVLYVSGGNTQVIAYSEGRYRIFGETIDIAVGNCLDRFARVLTLSNDPSPGYNIEQLAKKGEKFIELPYVVKGMDVSFSGILSYIEATAEEKLKSNECTPADLCYSLQETLFAMLVEITERAMAHCDKKDVLIVGGVGCNERLQEMMRIMCSERGGRLFATDDRYCIDNGAMIAYTGLLAWAHGMSTPLEEVTFTQRFRTDEVHAIWREKKDSTELMEEDV 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4510277 4515095 - CmoCh04G008940.1 Cmo04g00894 379869

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 399 420 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 324 344 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 507 516 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 254 267 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 377 389 IPR017861 -
Cmo04g00894 597 PRINTS O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 345 364 IPR017861 -
Cmo04g00894 597 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE 247 586 IPR000905 -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 23 53 - -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 1 15 - -
Cmo04g00894 597 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 54 103 IPR006456 -
Cmo04g00894 597 Gene3D - 375 537 - -
Cmo04g00894 597 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 54 103 IPR006456 -
Cmo04g00894 597 CDD NBD_sugar-kinase_HSP70_actin 254 422 - -
Cmo04g00894 597 TIGRFAM gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 254 550 IPR017861 -
Cmo04g00894 597 PANTHER TRNA N6-ADENOSINE THREONYLCARBAMOYLTRANSFERASE-RELATED 247 586 IPR034680 GO:0000408|GO:0002949
Cmo04g00894 597 Hamap tRNA N6-adenosine threonylcarbamoyltransferase [kae1]. 251 584 IPR034680 GO:0000408|GO:0002949
Cmo04g00894 597 Pfam ZF-HD protein dimerisation region 53 104 IPR006456 -
Cmo04g00894 597 Pfam tRNA N6-adenosine threonylcarbamoyltransferase 275 551 IPR000905 -
Cmo04g00894 597 Gene3D - 151 223 - -
Cmo04g00894 597 SUPERFAMILY Homeodomain-like 153 222 IPR009057 -
Cmo04g00894 597 MobiDBLite consensus disorder prediction 1 53 - -
Cmo04g00894 597 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 161 218 IPR006455 -
Cmo04g00894 597 SUPERFAMILY Actin-like ATPase domain 251 551 IPR043129 -
Cmo04g00894 597 Gene3D - 254 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00894 K01409 OSGEP, KAE1, QRI7; N6-L-threonylcarbamoyladenine synthase [EC:2.3.1.234] - csv:101218780 679.093
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo04g00894 Cmo07g00483 CCT
Cmo03g00772 Cmo04g00894 CCT
Cmo03g00772 Cmo04g00894 ECH
Cmo04g00894 Cmo07g00483 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00874 Cmo-Chr3:6821712 Cmo04g00894 Cmo-Chr4:4510277 3.82E-71 dispersed
Cmo04g00894 Cmo-Chr4:4510277 Cmo05g00555 Cmo-Chr5:2677874 6.14E-54 dispersed
Cmo14g02030 Cmo-Chr14:14856031 Cmo04g00894 Cmo-Chr4:4510277 4.89E-27 dispersed
Cmo04g00894 Cmo-Chr4:4510277 Cmo07g00569 Cmo-Chr7:2559410 9.26E-70 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g980 Blo04g00916 Blo16g00046 . . Bpe15g00427 Bpe13g00443 . . Cmo04g00894 . Cma03g00745 Cma07g00485 Car03g00680 Car07g00426 Sed14g1123 Cpe19g00812 Cpe10g00617 Bhi03g01303 Tan03g1984 Cmetu03g1675 . Hepe04g1519 . . Cla01g01913 Cam01g2000 Cec04g1655 Cco04g1718 Clacu01g2019 Cmu01g1894 Cre04g1570 . . Cone6ag1625 Cone9ag1550 Lsi01g00671 . Chy07g01244 Cme08g00852 . . Bda11g01865 . . . Bma03g00988 Bma06g00120 . Cmo03g00772 Cmo07g00483 . . . . . . . . . . . . . Cla07g00812 Cam07g0875 Cec07g0928 Cco07g0916 Clacu07g0850 Cmu07g0854 Cre07g1212 . Csa06g03243 Chy02g00645 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo04g01997 . 81 280 ZF-HD Transcription Factor Family AT2G02540 54.9 4.6e-51 199.1
Cmo06g00007 . 70 262 ZF-HD Transcription Factor Family AT2G02540 50.5 1.9e-49 193.7
Cmo05g00555 . 51 231 ZF-HD Transcription Factor Family AT4G24660 57.6 3.5e-51 199.1
Cmo07g00569 . 48 243 ZF-HD Transcription Factor Family AT4G24660 52.0 2.7e-48 189.5
Cmo12g00418 CST 85 295 ZF-HD Transcription Factor Family AT4G24660 50.7 3.6e-48 189.1
Cmo04g00894 CCT,ECH 54 219 ZF-HD Transcription Factor Family AT4G24660 55.0 4.0e-47 185.7
Cmo04g02895 . 26 252 ZF-HD Transcription Factor Family AT5G39760 53.6 1.9e-50 197.2
Cmo15g00285 . 691 918 ZF-HD Transcription Factor Family AT5G39760 56.2 5.5e-50 195.7
Cmo14g00601 . 30 254 ZF-HD Transcription Factor Family AT5G39760 56.3 9.4e-50 194.9
Cmo11g01047 . 31 281 ZF-HD Transcription Factor Family AT5G39760 54.9 1.6e-49 194.1
Cmo07g00483 CCT,CST,ECH 120 322 ZF-HD Transcription Factor Family AT2G18350 55.9 1.0e-51 201.1
Cmo04g02895 . 56 249 ZF-HD Transcription Factor Family AT1G69600 53.4 3.4e-49 192.6
Cmo15g00285 . 724 915 ZF-HD Transcription Factor Family AT1G69600 51.0 1.1e-47 187.6
Cmo18g01173 . 142 321 ZF-HD Transcription Factor Family AT1G69600 52.1 1.1e-47 187.6
Cmo14g00601 . 11 261 ZF-HD Transcription Factor Family AT5G15210 52.9 2.9e-49 193.0
Cmo04g02895 . 25 246 ZF-HD Transcription Factor Family AT5G15210 53.6 8.5e-49 191.4
Cmo11g01047 . 13 287 ZF-HD Transcription Factor Family AT5G15210 50.4 1.8e-46 183.7
Cmo15g00285 . 690 912 ZF-HD Transcription Factor Family AT5G15210 54.6 6.7e-46 181.8
Cmo04g01997 . 78 283 ZF-HD Transcription Factor Family AT1G14440 54.7 8.2e-56 214.9
Cmo06g00007 . 67 262 ZF-HD Transcription Factor Family AT1G14440 54.3 2.2e-53 206.8
Cmo11g01047 . 23 253 ZF-HD Transcription Factor Family AT3G28920 63.6 2.0e-57 220.3
Cmo14g00601 . 22 249 ZF-HD Transcription Factor Family AT3G28920 59.9 2.8e-56 216.5
Cmo04g02895 . 16 260 ZF-HD Transcription Factor Family AT3G28920 54.1 2.4e-55 213.4
Cmo15g00285 . 689 914 ZF-HD Transcription Factor Family AT3G28920 57.6 7.2e-52 201.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007916 1 3 1 1 1 1 1 1 1 1 0 1 1 3 1 1 1 2 0 1 1 1 1 1 1 1 1 3 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9575 PF00814 TsaD 2.40E-90 CL0108 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00894 Cmo_Chr04 FPKM 21.820492 21.536673 11.852425 13.81276 21.335655 17.351797 22.863176 10.134087 8.648341 8.849199