Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00907 ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATCTCAGAAGCTGCTTCTCCAATTATTAACAACTTGAAGAACAACAAGAAGAAGAACAACAACAAGAATCCTACTTCACTTGAGTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCAGGCGATGTTGATCCTCCTCCTCATCATCCTCATCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGCGGTGGTGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGAGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGTGAGACGTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAAGCGCTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGTTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCTTTCTCCAATCCTTCAGCCGCATGTTAG 819 44.93 MGLDDVSQTSLVLGLGISEAASPIINNLKNNKKKNNNKNPTSLEFEPCALTLGFSGDVDPPPHHPHHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4562273 4563990 - CmoCh04G009070.1 Cmo04g00907 379882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00907 272 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Cmo04g00907 272 SMART HOX_1 122 184 IPR001356 GO:0003677
Cmo04g00907 272 SUPERFAMILY Homeodomain-like 118 181 IPR009057 -
Cmo04g00907 272 Coils Coil 186 216 - -
Cmo04g00907 272 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 8 272 - -
Cmo04g00907 272 Pfam Homeobox associated leucine zipper 180 214 IPR003106 GO:0006355|GO:0043565
Cmo04g00907 272 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Cmo04g00907 272 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Cmo04g00907 272 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Cmo04g00907 272 Gene3D - 128 178 - -
Cmo04g00907 272 CDD homeodomain 124 178 IPR001356 GO:0003677
Cmo04g00907 272 PANTHER - 8 272 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00920 Cmo-Chr3:7019514 Cmo04g00907 Cmo-Chr4:4562273 1.24E-100 dispersed
Cmo04g00907 Cmo-Chr4:4562273 Cmo08g00548 Cmo-Chr8:3379157 8.10E-75 dispersed
Cmo04g00907 Cmo-Chr4:4562273 Cmo07g00624 Cmo-Chr7:2812539 3.08E-107 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9578 PF00046 Homeodomain 6.90E-16 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00907 K09338 - csv:101205848 334.724