Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00907 | ATGGGTTTGGATGATGTTTCTCAAACAAGCTTGGTTTTGGGGTTGGGGATCTCAGAAGCTGCTTCTCCAATTATTAACAACTTGAAGAACAACAAGAAGAAGAACAACAACAAGAATCCTACTTCACTTGAGTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCAGGCGATGTTGATCCTCCTCCTCATCATCCTCATCATCATCATTTGTATCGCCAAGCTTCCCCTCATAGCAGCGCTGTTTGTTCTTCCTTCTCCGGGGGCGGTGGTGGTGGGATTAAAAGGGAGAGAGACCTCAGCAGTGAAGAAGTTGAATTGGAGAGAGTTTGTTGTAGAGTTAGTGATGAAGATGAAGATGGTTGTAATACTAGGAAGAAGCTTAGGCTTTCTAAACAACAATCCGCGCTATTGGAAGAGAGTTTCAAACAAAATAGCACTCTCAACCCCAAACAAAAGCAAACCTTAGCCAGACACCTAAACCTACGCCCAAGACAAGTGGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAAATGAAACAAACAGAAGTAGACTGTGAGTTCTTGAAGAAATGTTGTGAGACGTTGACAAACGAAAATAGAAGACTACAGAAGGAGCTTCAAGAATTGAAAGCGCTAAAGCTCGCACACCCGCTGTACATGCACATGCCAGCAGCAACGTTAACCATGTGCCCATCCTGCGAAAGGGTGGGTGGCGTTGGCGTTGGCGTTGGCGATGGCGCTTCCAAACCCAAATTTTCAATGGCTCCCAAGCCCCACTTTTACAACCCTTTCTCCAATCCTTCAGCCGCATGTTAG | 819 | 44.93 | MGLDDVSQTSLVLGLGISEAASPIINNLKNNKKKNNNKNPTSLEFEPCALTLGFSGDVDPPPHHPHHHHLYRQASPHSSAVCSSFSGGGGGGIKRERDLSSEEVELERVCCRVSDEDEDGCNTRKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELKALKLAHPLYMHMPAATLTMCPSCERVGGVGVGVGDGASKPKFSMAPKPHFYNPFSNPSAAC | 272 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4562273 | 4563990 | - | CmoCh04G009070.1 | Cmo04g00907 | 379882 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00907 | 272 | ProSitePatterns | 'Homeobox' domain signature. | 155 | 178 | IPR017970 | GO:0000981|GO:0006355 | |
Cmo04g00907 | 272 | SMART | HOX_1 | 122 | 184 | IPR001356 | GO:0003677 | |
Cmo04g00907 | 272 | SUPERFAMILY | Homeodomain-like | 118 | 181 | IPR009057 | - | |
Cmo04g00907 | 272 | Coils | Coil | 186 | 216 | - | - | |
Cmo04g00907 | 272 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE | 8 | 272 | - | - | |
Cmo04g00907 | 272 | Pfam | Homeobox associated leucine zipper | 180 | 214 | IPR003106 | GO:0006355|GO:0043565 | |
Cmo04g00907 | 272 | SMART | halz | 180 | 223 | IPR003106 | GO:0006355|GO:0043565 | |
Cmo04g00907 | 272 | Pfam | Homeodomain | 124 | 178 | IPR001356 | GO:0003677 | |
Cmo04g00907 | 272 | ProSiteProfiles | 'Homeobox' domain profile. | 120 | 180 | IPR001356 | GO:0003677 | |
Cmo04g00907 | 272 | Gene3D | - | 128 | 178 | - | - | |
Cmo04g00907 | 272 | CDD | homeodomain | 124 | 178 | IPR001356 | GO:0003677 | |
Cmo04g00907 | 272 | PANTHER | - | 8 | 272 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00920 | Cmo-Chr3:7019514 | Cmo04g00907 | Cmo-Chr4:4562273 | 1.24E-100 | dispersed | |
Cmo04g00907 | Cmo-Chr4:4562273 | Cmo08g00548 | Cmo-Chr8:3379157 | 8.10E-75 | dispersed | |
Cmo04g00907 | Cmo-Chr4:4562273 | Cmo07g00624 | Cmo-Chr7:2812539 | 3.08E-107 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9578 | PF00046 | Homeodomain | 6.90E-16 | CL0123 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00907 | K09338 | - | csv:101205848 | 334.724 |