Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00911 ATGCCATTTTTGAACTTTCCACCATCCTCTCTCTTTCTTCTTTTCACTCTCTCCTTCTTCCACTTCTTCGCTGTGGGTCTCTTCTCCAACGTCGACTACGATATTCTGATTCGTGTCAAGAACACCCATCTCGACGATCCCGATGGAGCTTTGAAGGATTGGGTTCCCAACCAAGCTCACACCCCCTGTTCTTGGACTGGCATCACCTGCGATTCCACTAACCTTTCTGTTCTTGCCATCAATTTGACCACTTCCAACATCGCCGGCGGATTTCCCTACGATTTCTGCCGGATTCCCACCCTTCGAAACCTTTCTATCACAGTCACCAACATCAATGGAACTTTACTCTCCCCTTCCTTCTCTCTCTGTTCTCATCTCCAACTTCTCAATCTTTCCTCTAATCTACTTGTCGGTAGGCTGCCCGAGTTTTCCCCTCTTTTCACACAGCTTCAAATTCTCGATCTCTCCTCCAATAATTTCACCGGCGATGTTCCTCTCAGTTTCGGCCAGTTGCCGGCGCTCAGAGTGCTTCGTTTGACGATGAATTTGCTCGACGGCCCTGTCCCCTCTGTTCTGGGAAATCTCAGTCAGTTAACCGAAATGGCCATCGCTTATAATCCCTTCAAACCGAGTCCCTTACCGTCCGAGTACGGAAACCTGTTAAAACTCGAAAATATGTTTATAAGCACAGCAAATCTCACCGGACCCATTCCTGGTTCCATCGGAAAACTTGCTATGCTTACCAATCTTGATTTAACTTTCAATTCGATATCTGGCCCGCTCCCGGATTCAATCGGCGGACTCAGGAGCATAAAGAGTATCCAACTCTACAATAACCGAATCTCCGGTGAATTGCCAGAGAGCATCGGTAATTGGACTTCTCTGTCACGTCTCGACCTCTCGCAGAATAGTCTCACCGGAAAGTTACCGGATAAATTTGCTGCGATCCCTCTAGAAATTCTGCATCTCAATGACAACTTCCTCCAAGGGGAGTTTCCGGAGAGTTTAGCTTCGAGCCCACATCTTACAGATTTGAAACTGTTCAACAATAGCTTTTCTGGGACACTTCCCCAAAATTTGGGTCTCAACTCTCCCTTTACTGAGATTGATTTCTCTTCCAACCATTTCGAAGGTAATATTCCGAAATTTCTCTGCCAACAAAACCGCCTTCAGAAATTTATTTTATTCAGCAACAGCTTCTCTGGGAATTTCCCAGAATCGTACGGCGCTTGTGATTCTCTTGTATATGTCAGAGTCGAGGACAATCAACTTTCCGGCGAGGTACCGGACTCGTTCTGGAAACTCCCCAAGCTTAATAGCATACAGATGTCGGATAATCAATTTCAGGGCTCCATTCCGCCGGCGATAAGTCTCGCTCGCGATCTCCAAGTGTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTGCCAGCAGAGATTTGCAAATTGAAAGAGCTAGTTCGGTTTGACATCGGCAGGAACAAATTCACCGGTGGAGTTCCTTCCTGTATAACAGAGTTGCAGAAACTTCAAAAGCTCGACATGCAAGAAAACCAGTTCGCCGGCGAAATTCCCAAGTTGGTTCAGTTCTGGAAAGAACTAACCGAGCTGAATCTGTCCCATAATCAATTTACCGGCAAGATTCCGCCTCAGCTTGGCGATTTACCGGTTCTAACGTACTTGGATCTCTCTTCAAATTTACTCTCCGGCGAAATCCCCGAGGAATTAACAAAGCTGAAACCGGACCAATTCAATTTATCGAACAACAAATTGACCGGAAAAGTTCCATCCGGCCTCGTCAACGAACAGTTCGTCGGTAGTTTACTGGGTAATCCGGGTCTCTGTAGCTCGGATTTGAAGCCACTGAACCGGTGCTCAAAACCCAAACCCTCAAGCTTCTATGTTGTGGTGATTCTCTCAGTTCTGGCTTTCGTTCTCATCGGGTCTCTCATTTGGGTAATCAAATTCAAGATGAATCTGTTGGGCAAATCCAAATCTCCATGGACGGCGACCAAGTTCCAAAGGGTCGGGTTCGACGAAGAAGATGTAATTCCTCATCTAACCAAAGGGAATATAATCGGGTCGGGCGGTTCGGGTACCGTATTCAAAGTGAATCTGAAAACAGGTCAGACCGTAGCCGCCAAAAGTCTGTGGAGAGGCCACAACCAATCGGATATTGAATCGGTTTTCCAATCGGAAGTTGAGACGTTGGGTCGGATCCGGCATGCCAATATTGTGAAGTTGATCTTCAGTTGCAGCAATGGCGAAGGAAGTAGAATCCTTGTGTATGAGTACATGGAGAATGGAAGCTTAGGAGATGTTCTACACGAGAACAAATCCGAAGCTTTGTCAGATTGGTCGAAAAGATTGAACATCGCCATGGGAGCGGCCCAGGGATTAGCTTATCTGCACCACGACTGCGTCCCTCCAATAATCCATCGCGACGTGAAGAGCAACAACATTCTGTTGGACGCTGAATTTTGCCCTCGAGTGGCTGATTTTGGCCTGGCAAAGACGCTGGAACGCCAGACAGAGGGCAACGATGCTGGTGTCATGTCTCGCATCGCTGGCTCCTACGGCTATATTGCCCCCGGTATGCAACATCCAAAAGCTAAAGCCTTTTTAAAATATGGATATACTATGAAGGTAACCGAGAAGAGCGACGTGTATAGCTTTGGAGTAGTTTTGATGGAGTTAGTGACGGGGAAGCGACCAAACGACCCGAGCTTTGGGGAGAACAAAGATATCGTGAAATGGGTAACGGAGGCTGCTTTATCAGAGGTTGAGGAGAAAGGGTTGAGCTTGGATGAGATAATTGATGAAAAGTTGGATCCAAGAACATGTGAAGTAGAGGAGATAGCAAAGATTTTGGATGTGGCTGTGCTTTGTACATCTGCTTTGCCCATTGACAGACCTTCCATGAGAAAAGTAGTTGAGATGATAAGAGACACCAAACTCCCTCCTTCTAAGTCATGA 2976 46.71 MPFLNFPPSSLFLLFTLSFFHFFAVGLFSNVDYDILIRVKNTHLDDPDGALKDWVPNQAHTPCSWTGITCDSTNLSVLAINLTTSNIAGGFPYDFCRIPTLRNLSITVTNINGTLLSPSFSLCSHLQLLNLSSNLLVGRLPEFSPLFTQLQILDLSSNNFTGDVPLSFGQLPALRVLRLTMNLLDGPVPSVLGNLSQLTEMAIAYNPFKPSPLPSEYGNLLKLENMFISTANLTGPIPGSIGKLAMLTNLDLTFNSISGPLPDSIGGLRSIKSIQLYNNRISGELPESIGNWTSLSRLDLSQNSLTGKLPDKFAAIPLEILHLNDNFLQGEFPESLASSPHLTDLKLFNNSFSGTLPQNLGLNSPFTEIDFSSNHFEGNIPKFLCQQNRLQKFILFSNSFSGNFPESYGACDSLVYVRVEDNQLSGEVPDSFWKLPKLNSIQMSDNQFQGSIPPAISLARDLQVLLISGNNFSGQLPAEICKLKELVRFDIGRNKFTGGVPSCITELQKLQKLDMQENQFAGEIPKLVQFWKELTELNLSHNQFTGKIPPQLGDLPVLTYLDLSSNLLSGEIPEELTKLKPDQFNLSNNKLTGKVPSGLVNEQFVGSLLGNPGLCSSDLKPLNRCSKPKPSSFYVVVILSVLAFVLIGSLIWVIKFKMNLLGKSKSPWTATKFQRVGFDEEDVIPHLTKGNIIGSGGSGTVFKVNLKTGQTVAAKSLWRGHNQSDIESVFQSEVETLGRIRHANIVKLIFSCSNGEGSRILVYEYMENGSLGDVLHENKSEALSDWSKRLNIAMGAAQGLAYLHHDCVPPIIHRDVKSNNILLDAEFCPRVADFGLAKTLERQTEGNDAGVMSRIAGSYGYIAPGMQHPKAKAFLKYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDPSFGENKDIVKWVTEAALSEVEEKGLSLDEIIDEKLDPRTCEVEEIAKILDVAVLCTSALPIDRPSMRKVVEMIRDTKLPPSKS 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4582254 4585460 - CmoCh04G009110.1 Cmo04g00911 379886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00911 991 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 10 986 - -
Cmo04g00911 991 SUPERFAMILY Protein kinase-like (PK-like) 680 981 IPR011009 -
Cmo04g00911 991 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Cmo04g00911 991 ProSiteProfiles Protein kinase domain profile. 687 986 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00911 991 Pfam Leucine Rich repeats (2 copies) 533 572 IPR025875 -
Cmo04g00911 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 811 823 IPR008271 GO:0004672|GO:0006468
Cmo04g00911 991 ProSitePatterns Protein kinases ATP-binding region signature. 693 715 IPR017441 GO:0005524
Cmo04g00911 991 Gene3D Phosphorylase Kinase; domain 1 672 765 - -
Cmo04g00911 991 SUPERFAMILY L domain-like 61 360 - -
Cmo04g00911 991 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 10 986 - -
Cmo04g00911 991 SMART serkin_6 687 990 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00911 991 Pfam Leucine rich repeat 149 207 IPR001611 GO:0005515
Cmo04g00911 991 Gene3D Transferase(Phosphotransferase) domain 1 766 987 - -
Cmo04g00911 991 Gene3D Ribonuclease Inhibitor 212 316 IPR032675 -
Cmo04g00911 991 SUPERFAMILY L domain-like 367 621 - -
Cmo04g00911 991 Gene3D Ribonuclease Inhibitor 317 628 IPR032675 -
Cmo04g00911 991 Pfam Protein kinase domain 689 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo04g00911 991 Gene3D Ribonuclease Inhibitor 30 211 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00911 Cmo-Chr4:4582254 Cmo18g00374 Cmo-Chr18:2433680 0 dispersed
Cmo04g00911 Cmo-Chr4:4582254 Cmo13g00644 Cmo-Chr13:6856844 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74254 PF00069 Pkinase 1.30E-41 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00911 - - cmax:111486690 1837.77