Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo04g00918 | ATGGACATGAACATCAACAATTCTTCGGGGCAATTCAAAGTCAGACTACAAAGAAGTGGTGGAAATGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACCCATTAACACTGACAGATTACTAGGAACCTCGTTTAAAGTGATAGTATCCACTGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTAAATGTAGACAAAAGGTGGGGAGAATTTTGTGACTTTTATAAACCAAGATGTGTGGAAAATGACGTCGTTTTTGCTTCCTTTTGGCTCTGCAGATTCGTGTTGCTGAGAGGAAGTTCTGGGTTTTATACGTATGCCGTATTCGAGAGGCTGACGGGGTGCCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGGCAGAGAGTGATGCCGACAATGGACGACCGAAATAATGGTGATCCATTGCAATATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTACTCAATAGAGGACAAGGACAACCTACTTCACGGCTGGATCTCCAGAAATCCACCGACTGGATTCTGGATGATCACTCCTAGTGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTGACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGCTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAGAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTACCGTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAACGGAAATCAGTAAGTGGCCCTATACTTTTCCCCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATCAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTCCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTACGAGGGAAATATAACAATCAAGGCTGGGTCTAAAATTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCGCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGGTCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACATTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAGTTACAGGTTCGGTTAAACGATAAAACGTCGAGCCAACCCGCGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGTGCCTTTCCCTGGCACTCAGTTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAAGCCACGGCCCTTTCCAAGGTCTCATGTACGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA | 2001 | 47.13 | MDMNINNSSGQFKVRLQRSGGNVVMDNGIVQVTLSTPDGDVVGLSYNGIDNILDTKTEAPNRGYWDAVWNNPNEPINTDRLLGTSFKVIVSTDEQLEISFVKTWSVAVGNKNAPVNVDKRWGEFCDFYKPRCVENDVVFASFWLCRFVLLRGSSGFYTYAVFERLTGCPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRNNGDPLQYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLLHGWISRNPPTGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFASTHYAGTDVGMKFAEGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKIKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFTVGVDNYTQDWFYAHVTRDVGNQTYEATTWEVRFSLQSVNQTANYTLQIALASAADCELQVRLNDKTSSQPAFTTGRIGRDNAIARHGIHGLYWLYSVPFPGTQFLKGNNSMYFTQARSHGPFQGLMYDYVRLEAPPRT | 666 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 4613514 | 4616719 | + | CmoCh04G009180.1 | Cmo04g00918 | 379893 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo04g00918 | 666 | Pfam | Polysaccharide lyase family 4, domain II | 386 | 458 | IPR029413 | - | |
Cmo04g00918 | 666 | Pfam | Polysaccharide lyase family 4, domain III | 472 | 660 | IPR029411 | - | |
Cmo04g00918 | 666 | Gene3D | - | 470 | 661 | - | - | |
Cmo04g00918 | 666 | CDD | RGL4_N | 14 | 327 | - | - | |
Cmo04g00918 | 666 | Gene3D | - | 360 | 460 | - | - | |
Cmo04g00918 | 666 | CDD | RGL4_M | 363 | 459 | IPR029413 | - | |
Cmo04g00918 | 666 | Pfam | Rhamnogalacturonate lyase family | 146 | 232 | IPR010325 | - | |
Cmo04g00918 | 666 | Pfam | Rhamnogalacturonate lyase family | 7 | 121 | IPR010325 | - | |
Cmo04g00918 | 666 | Gene3D | - | 14 | 330 | IPR014718 | GO:0030246 | |
Cmo04g00918 | 666 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 20 | 121 | - | - | |
Cmo04g00918 | 666 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 146 | 665 | - | - | |
Cmo04g00918 | 666 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 20 | 121 | - | - | |
Cmo04g00918 | 666 | SUPERFAMILY | Galactose-binding domain-like | 470 | 661 | IPR008979 | - | |
Cmo04g00918 | 666 | CDD | RGL4_C | 474 | 661 | - | - | |
Cmo04g00918 | 666 | PANTHER | RHAMNOGALACTURONATE LYASE FAMILY PROTEIN | 146 | 665 | - | - | |
Cmo04g00918 | 666 | SUPERFAMILY | Galactose mutarotase-like | 18 | 325 | IPR011013 | GO:0003824|GO:0005975|GO:0030246 | |
Cmo04g00918 | 666 | SUPERFAMILY | Starch-binding domain-like | 362 | 460 | IPR013784 | GO:0030246 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00567 | Cmo-Chr3:5560628 | Cmo04g00918 | Cmo-Chr4:4613514 | 9.90E-139 | dispersed | |
Cmo04g00918 | Cmo-Chr4:4613514 | Cmo12g00167 | Cmo-Chr12:1101111 | 0 | dispersed | |
Cmo04g00918 | Cmo-Chr4:4613514 | Cmo03g00891 | Cmo-Chr3:6907147 | 0 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo04g00918 | K18195 | - | csv:101215252 | 1078.16 |