Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00918 ATGGACATGAACATCAACAATTCTTCGGGGCAATTCAAAGTCAGACTACAAAGAAGTGGTGGAAATGTCGTGATGGATAATGGTATTGTCCAAGTTACTCTGTCCACCCCAGATGGTGACGTGGTTGGATTGAGCTACAATGGAATCGATAACATTCTGGACACCAAAACCGAAGCGCCGAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAAACGAACCCATTAACACTGACAGATTACTAGGAACCTCGTTTAAAGTGATAGTATCCACTGACGAGCAACTGGAAATCTCGTTTGTCAAAACATGGAGCGTTGCAGTTGGGAACAAGAACGCCCCTGTAAATGTAGACAAAAGGTGGGGAGAATTTTGTGACTTTTATAAACCAAGATGTGTGGAAAATGACGTCGTTTTTGCTTCCTTTTGGCTCTGCAGATTCGTGTTGCTGAGAGGAAGTTCTGGGTTTTATACGTATGCCGTATTCGAGAGGCTGACGGGGTGCCCGGAGATTGAAATGGATCAAGTTAGGATCGTTTTCAGACCTCAGAAAAAAATGTTTGATTACATGGCTGTATCGGACAGTAGGCAGAGAGTGATGCCGACAATGGACGACCGAAATAATGGTGATCCATTGCAATATCCTGAGGCTGTTCTTTTGACCAATCCTGCCAATGAGAAACTCAGAGGAGAGGTAGATGACAAGTACATGTACTCAATAGAGGACAAGGACAACCTACTTCACGGCTGGATCTCCAGAAATCCACCGACTGGATTCTGGATGATCACTCCTAGTGACGAGTTCCGCGTCGCCGGTCCGGTCAAGCAGGATCTGACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGCTAGCACCCACTACGCTGGAACGGATGTGGGCATGAAATTTGCAGAAGGAGAGCCTTGGAAGAAGGTCTTCGGCCCTGTATTTGTCTATCTCAACTCTGCTTCCCCTAAGGAGGATTACCGTTCTCTATGGCAAGATGCCAAACAACAGTTGGCAACGGAAATCAGTAAGTGGCCCTATACTTTTCCCCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGCGTCGCCGGCCGGTTACTAATCCGTGATGGGTCTATCAGCGACAGACTTTTGCGTGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAAGGGAAAGCAAGGGCTATCAATTCTGGACTCAAGCTGACAGTCACGGCAGCTTCTTAATCAATAACGTCCGAGAAGGAGTTTATAATCTTTATGCTTTTGTTCCTGGCTTTATTGGAGACTACAAGTACGAGGGAAATATAACAATCAAGGCTGGGTCTAAAATTAAATTGGATGAGATGGTGTTTGATCCGCCGAGACAGGGCCCAACCATCTGGGAGATCGGCATTCCCGACCGCACAGCAGCGGAGTTTTATGTGCCCGACCCTTTTCCGACTCTCATGAATAAACTATACATTGACCATGATGACAAGTTCAGACAATATGGGTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACTGTTGGTGTGGATAATTATACCCAGGACTGGTTCTATGCGCATGTTACCAGGGATGTGGGGAATCAAACATACGAAGCAACCACATGGGAGGTCAGATTTTCATTGCAATCTGTGAACCAAACGGCAAATTACACATTGCAAATTGCATTGGCATCTGCTGCTGATTGCGAGTTACAGGTTCGGTTAAACGATAAAACGTCGAGCCAACCCGCGTTTACGACAGGAAGGATCGGAAGGGACAACGCAATTGCAAGGCATGGGATTCATGGGCTTTACTGGTTATACTCGGTGCCTTTCCCTGGCACTCAGTTTCTGAAAGGGAACAACTCCATGTATTTCACTCAGGCAAGAAGCCACGGCCCTTTCCAAGGTCTCATGTACGACTACGTTCGACTCGAAGCTCCACCTCGAACATAA 2001 47.13 MDMNINNSSGQFKVRLQRSGGNVVMDNGIVQVTLSTPDGDVVGLSYNGIDNILDTKTEAPNRGYWDAVWNNPNEPINTDRLLGTSFKVIVSTDEQLEISFVKTWSVAVGNKNAPVNVDKRWGEFCDFYKPRCVENDVVFASFWLCRFVLLRGSSGFYTYAVFERLTGCPEIEMDQVRIVFRPQKKMFDYMAVSDSRQRVMPTMDDRNNGDPLQYPEAVLLTNPANEKLRGEVDDKYMYSIEDKDNLLHGWISRNPPTGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFASTHYAGTDVGMKFAEGEPWKKVFGPVFVYLNSASPKEDYRSLWQDAKQQLATEISKWPYTFPQSEDFPSSAQRGSVAGRLLIRDGSISDRLLRASNAFVGLALPGPVGSWQRESKGYQFWTQADSHGSFLINNVREGVYNLYAFVPGFIGDYKYEGNITIKAGSKIKLDEMVFDPPRQGPTIWEIGIPDRTAAEFYVPDPFPTLMNKLYIDHDDKFRQYGLWERYAAMYPNNDLVFTVGVDNYTQDWFYAHVTRDVGNQTYEATTWEVRFSLQSVNQTANYTLQIALASAADCELQVRLNDKTSSQPAFTTGRIGRDNAIARHGIHGLYWLYSVPFPGTQFLKGNNSMYFTQARSHGPFQGLMYDYVRLEAPPRT 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4613514 4616719 + CmoCh04G009180.1 Cmo04g00918 379893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00918 666 Pfam Polysaccharide lyase family 4, domain II 386 458 IPR029413 -
Cmo04g00918 666 Pfam Polysaccharide lyase family 4, domain III 472 660 IPR029411 -
Cmo04g00918 666 Gene3D - 470 661 - -
Cmo04g00918 666 CDD RGL4_N 14 327 - -
Cmo04g00918 666 Gene3D - 360 460 - -
Cmo04g00918 666 CDD RGL4_M 363 459 IPR029413 -
Cmo04g00918 666 Pfam Rhamnogalacturonate lyase family 146 232 IPR010325 -
Cmo04g00918 666 Pfam Rhamnogalacturonate lyase family 7 121 IPR010325 -
Cmo04g00918 666 Gene3D - 14 330 IPR014718 GO:0030246
Cmo04g00918 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 20 121 - -
Cmo04g00918 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 146 665 - -
Cmo04g00918 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 20 121 - -
Cmo04g00918 666 SUPERFAMILY Galactose-binding domain-like 470 661 IPR008979 -
Cmo04g00918 666 CDD RGL4_C 474 661 - -
Cmo04g00918 666 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 146 665 - -
Cmo04g00918 666 SUPERFAMILY Galactose mutarotase-like 18 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cmo04g00918 666 SUPERFAMILY Starch-binding domain-like 362 460 IPR013784 GO:0030246
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00567 Cmo-Chr3:5560628 Cmo04g00918 Cmo-Chr4:4613514 9.90E-139 dispersed
Cmo04g00918 Cmo-Chr4:4613514 Cmo12g00167 Cmo-Chr12:1101111 0 dispersed
Cmo04g00918 Cmo-Chr4:4613514 Cmo03g00891 Cmo-Chr3:6907147 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00918 K18195 - csv:101215252 1078.16