Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00920 ATGGCTGGGGGAGGAATGATCCGGCACCTACTCAGGAAATTTCCATCTCAATCGTCAACCCCTCCTTTGACCTCTTCCCTTATTTCAAAAAACGAGGAAGCTGGTTTTGCTGGGATGAACTCCTTTAGAAGGCTTGCGCTACTTGGAGCAGGCATTTCTGGATTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGCTTGGAGTGTCCAAACTATCCCTGGCCTCACCAGGGCATTTTGAGTTCATATGATCATGCTTCGATTCGGCGTGGTCATCAGGTTTATCAACAAGTGTGTGCATCTTGTCATTCCATGTCTTTGATATCGTATCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACGAAAGCAATGGCTGCTGAAATTGAGGTAGTGGATGGGCCTAATGATGAGGGTGAGATGTTCACTCGTCCGGGTAAACTCAGTGATCGGTTTCCTGAACCATATGCCAATGAACAAGCTGCTAGATTTGCTAATGGTGGAGCTTACCCTCCGGATCTGAGCCTCATCACAAAGGCTCGTCATAATGGTCAGAATTATGTATTTTCCCTTCTGACTGGTTATCGTGACCCACCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGCGGAGCAATTGCAATGCCTAAGATGCTTAATGATGGAGCTGTTGAATACGAAGATGGTACCCCTGCAACAGAAGCACAGATGGGGAAAGATGTTGTGTCATTCTTGTCATGGGCAGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTCGTGCTCTCTTTGGCTCTACTTCAGGCCGCATACTACCGCCGATTGAAGTGGTCAGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTAGTCAACTAG 924 46.75 MAGGGMIRHLLRKFPSQSSTPPLTSSLISKNEEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPNYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPEPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4624245 4630151 - CmoCh04G009200.1 Cmo04g00920 379895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00920 307 Pfam Cytochrome C1 family 78 294 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 ProSiteProfiles Cytochrome c family profile. 90 197 IPR009056 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 76 95 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 96 115 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 141 161 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 174 198 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 212 223 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 223 242 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 243 262 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PRINTS Cytochrome C1 signature 262 277 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 Gene3D - 263 306 - -
Cmo04g00920 307 SUPERFAMILY Cytochrome c 71 261 IPR036909 GO:0009055|GO:0020037
Cmo04g00920 307 PANTHER CYTOCHROME C1 25 307 IPR002326 GO:0009055|GO:0020037
Cmo04g00920 307 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 25 307 - -
Cmo04g00920 307 Gene3D - 67 262 IPR036909 GO:0009055|GO:0020037
Cmo04g00920 307 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 262 306 IPR021157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00871 Cmo-Chr4:4357489 Cmo04g00920 Cmo-Chr4:4624245 1.74E-11 dispersed
Cmo16g00800 Cmo-Chr16:4077870 Cmo04g00920 Cmo-Chr4:4624245 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00920 K00413 - csv:101215010 602.438