Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00922 ATGGCTCCTGCGACTAACTGGCTTTCCTTTTCCCTCTCTCCCATTGAAATGCTTCGCTCTGCTGACTCTCAGTTTGTTCCTTATGAAACCTCCTCCACCGCCTCTCCTCACTATCTCTTGGACAACTTCTACTCCAATAATGGATGGAGTAATAGTACTAATGCTCACCCCAAATCATCATCCCAACTTTTCTTCATGGATGGAGATGAAAACAATGAGGTTATCAAAGAAGATCATCATAATCAATCGACACCCGCCATTTATACGAGCTATCTTCATCCACAAACCCACCACCAACCCAAACTGGAAGATTTCCTCGGCGATTCCTCGTCGATGGTGCGGTATTCCGACAGCCAGACGGAGACTCAAGATTCGTCTTTGACTCATATTTACGACCATGGCTCGGCACCCTATTTTGGGGACCAACAGGATCTCAAAACCATTGCGGCGTTTCGTGCTTTTTCTGGGAACTCCGGCTCTGAAGTGGACGATTCGGCTTCTATGGGGAGAACCCAGATCGCGGCCGGTGCTCATTCTATTGAGTCTTCGGTTAGAAATGAGTTGGGGACTTTCTCTAGCTGCCCCACGGGTGCTCTTTCCCTCGCCGTCGCACAGAGCTCTGACACGGTGGCAGCTGGGGGTGTCGTGGCGGTTGACTCCGATTCGTCCAAGAAAATTGCCGACACTTTTGGCCAGCGAACGTCAATTTACAGAGGAGTCACTAGGTTTGGAATAGAGTGTATTGAGTTAGTAGTAGAGTTGGATCAGCATGTATGCACAGATGGACGGGTAGATACGAGGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGGAAAGCATTCAGAATGTTATGAACAAATTTGGAAAGTGTGGGTATGATAAGGAAGATAAGGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACTGCAACCACCAATTTTCCTGTTTCGAATTACGCCAAAGAATTGGAAGAGATGAAACATGTCACCAAGCAAGAGTTTATTGCATCTTTGCGAAGAAAAAGCAGTGGTTTTTCGAGGGGTGCATCTATTTACAGAGGTGTGACGAGGCATCATCAGCAAGGTCGATGGCAGGCGAGGATTGGGCGTGTTGCAGGGAATAAGGATTTGTATCTCGGGACATTTGCTACTGAGGAGGAAGCTGCTGAGGCGTATGATATAGCAGCGATCAAGTTTAGGGGTTTGAATGCGGTGACGAACTTCGAGATGAATCGATACGATGTGGAGGCTATTGCGAAGAGTGCACTGCCAATTGGGGGAGCTGCAAAAAGGCTGAAGCTTTGCCTTGAATCGGATCAGAAGCAGATATCAAATCATGATCAAGCAGCCCAATGCAGCAGTGGAAGCAACAGCATCAACTTCGGCGCCCCTATTCAGTCTATGCCACCCATCCCCTGTGGAATTCCATATGATACTGCAGCCATGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAACCCTCTCGGCTCGTCGGAGTCGACCACCCCAGCCATTGGAGCATCTACCATGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCACCAGTATTAG 1620 48.46 MAPATNWLSFSLSPIEMLRSADSQFVPYETSSTASPHYLLDNFYSNNGWSNSTNAHPKSSSQLFFMDGDENNEVIKEDHHNQSTPAIYTSYLHPQTHHQPKLEDFLGDSSSMVRYSDSQTETQDSSLTHIYDHGSAPYFGDQQDLKTIAAFRAFSGNSGSEVDDSASMGRTQIAAGAHSIESSVRNELGTFSSCPTGALSLAVAQSSDTVAAGGVVAVDSDSSKKIADTFGQRTSIYRGVTRFGIECIELVVELDQHVCTDGRVDTRRIYGITAVEERVRLGKDVKESIQNVMNKFGKCGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMNRYDVEAIAKSALPIGGAAKRLKLCLESDQKQISNHDQAAQCSSGSNSINFGAPIQSMPPIPCGIPYDTAAMLYHHNYFHHLQPNPLGSSESTTPAIGASTMAPQAAEFFVWPHQY 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4635302 4639092 - CmoCh04G009220.1 Cmo04g00922 379897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00922 539 CDD AP2 363 422 IPR001471 GO:0003700|GO:0006355
Cmo04g00922 539 ProSiteProfiles AP2/ERF domain profile. 236 328 IPR001471 GO:0003700|GO:0006355
Cmo04g00922 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 298 517 - -
Cmo04g00922 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 243 - -
Cmo04g00922 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 298 517 - -
Cmo04g00922 539 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 243 - -
Cmo04g00922 539 SUPERFAMILY DNA-binding domain 363 423 IPR016177 GO:0003677
Cmo04g00922 539 Gene3D AP2/ERF domain 291 330 IPR036955 GO:0003700|GO:0006355
Cmo04g00922 539 Gene3D AP2/ERF domain 364 424 IPR036955 GO:0003700|GO:0006355
Cmo04g00922 539 Pfam AP2 domain 364 414 IPR001471 GO:0003700|GO:0006355
Cmo04g00922 539 ProSiteProfiles AP2/ERF domain profile. 364 422 IPR001471 GO:0003700|GO:0006355
Cmo04g00922 539 SUPERFAMILY DNA-binding domain 301 330 IPR016177 GO:0003677
Cmo04g00922 539 SMART rav1_2 364 428 IPR001471 GO:0003700|GO:0006355
Cmo04g00922 539 SMART rav1_2 292 334 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00922 Cmo-Chr4:4635302 Cmo16g00804 Cmo-Chr16:4136796 0 dispersed
Cmo04g00922 Cmo-Chr4:4635302 Cmo05g00837 Cmo-Chr5:5236754 5.19E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9580 PF00847 AP2 2.10E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00922 K09285 - csv:101217714 713.375