Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00939 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCGGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGGTGGGTTTTCTTTCTCTTCTATCGTTCTCTTGATGTCTGTCTTAATTAGTGTTCAGAAATGTATCGTTCGCTATTTTCTAGTTCTTACGCTTGTTCGTGGTCTTGAATTCCGTTTGTTCAGTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCGAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCCAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAATTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCAGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 891 46.24 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPGGFSFSSIVLLMSVLISVQKCIVRYFLVLTLVRGLEFRLFSEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4752502 4758068 + CmoCh04G009390.1 Cmo04g00939 379914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00939 296 CDD PHD_AL_plant 243 292 IPR044104 -
Cmo04g00939 296 PANTHER CPG BINDING PROTEIN 1 296 IPR045104 GO:0006355|GO:0042393
Cmo04g00939 296 MobiDBLite consensus disorder prediction 180 242 - -
Cmo04g00939 296 ProSiteProfiles Zinc finger PHD-type profile. 240 292 IPR019787 -
Cmo04g00939 296 ProSitePatterns Zinc finger PHD-type signature. 243 289 IPR019786 -
Cmo04g00939 296 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 1 296 - -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 224 241 - -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 204 223 - -
Cmo04g00939 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 291 IPR013083 -
Cmo04g00939 296 Pfam PHD-finger 243 292 IPR019787 -
Cmo04g00939 296 SUPERFAMILY FYVE/PHD zinc finger 231 293 IPR011011 -
Cmo04g00939 296 SMART PHD_3 242 290 IPR001965 -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 180 203 - -
Cmo04g00939 296 Pfam Alfin 85 179 IPR021998 GO:0006355|GO:0042393
Cmo04g00939 296 Pfam Alfin 11 43 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00939 Cmo-Chr4:4752502 Cmo08g00755 Cmo-Chr8:4772591 3.67E-108 dispersed
Cmo16g00814 Cmo-Chr16:4208228 Cmo04g00939 Cmo-Chr4:4752502 1.40E-122 transposed
Cmo16g00813 Cmo-Chr16:4203499 Cmo04g00939 Cmo-Chr4:4752502 2.43E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9582 PF12165 Alfin 1.30E-49 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00939 - - csv:101212601 457.988