Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00939 ATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGATGAGGTCTACAGCGACTTTAAAGGCAGACGTGCCGGCTTGATCAAAGCCCTCACCGCGGATGTTGAGAAGTTTTACCAGCAGTGCGATCCTGGTGGGTTTTCTTTCTCTTCTATCGTTCTCTTGATGTCTGTCTTAATTAGTGTTCAGAAATGTATCGTTCGCTATTTTCTAGTTCTTACGCTTGTTCGTGGTCTTGAATTCCGTTTGTTCAGTGAGAAGGAGAACCTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCTGTGGAGGAGGTGCCCCCTGAGCTCCCGGAACCAGCATTAGGCATAAACTTTGCGAGGGATGGGATGCAGGAGAAAGATTGGTTATCGCTGGTTGCAGTTCACAGTGATTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGATTTGGGAAGAATGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTAAGTGGAAATGGTAAGCAGTCAAAAGAACAGTCTGCCACTCATAACAATAGCAGCAAAAGCAAATCGGGTGGGAAGATGTCCAGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCAAAAGAGGATGAAGATAGCGGGGAAGACGAGGAGGAAGAAGAAGATGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAATTACGGCAACGATGAATTCTGGATTTGTTGTGATGTATGTGAAAGATGGTTCCATGGAAAGTGTGTGAAGATTACACCAGCCAAGGCCGAGCATATCAAACAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 891 46.24 MEGMPHPIPRTVDEVYSDFKGRRAGLIKALTADVEKFYQQCDPGGFSFSSIVLLMSVLISVQKCIVRYFLVLTLVRGLEFRLFSEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPSVFEVVSGNGKQSKEQSATHNNSSKSKSGGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4752502 4758068 + CmoCh04G009390.1 Cmo04g00939 379914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00939 296 CDD PHD_AL_plant 243 292 IPR044104 -
Cmo04g00939 296 PANTHER CPG BINDING PROTEIN 1 296 IPR045104 GO:0006355|GO:0042393
Cmo04g00939 296 MobiDBLite consensus disorder prediction 180 242 - -
Cmo04g00939 296 ProSiteProfiles Zinc finger PHD-type profile. 240 292 IPR019787 -
Cmo04g00939 296 ProSitePatterns Zinc finger PHD-type signature. 243 289 IPR019786 -
Cmo04g00939 296 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 1 296 - -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 224 241 - -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 204 223 - -
Cmo04g00939 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 232 291 IPR013083 -
Cmo04g00939 296 Pfam PHD-finger 243 292 IPR019787 -
Cmo04g00939 296 SUPERFAMILY FYVE/PHD zinc finger 231 293 IPR011011 -
Cmo04g00939 296 SMART PHD_3 242 290 IPR001965 -
Cmo04g00939 296 MobiDBLite consensus disorder prediction 180 203 - -
Cmo04g00939 296 Pfam Alfin 85 179 IPR021998 GO:0006355|GO:0042393
Cmo04g00939 296 Pfam Alfin 11 43 IPR021998 GO:0006355|GO:0042393
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00939 - - - csv:101212601 457.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00939 Cmo-Chr4:4752502 Cmo08g00755 Cmo-Chr8:4772591 3.67E-108 dispersed
Cmo16g00814 Cmo-Chr16:4208228 Cmo04g00939 Cmo-Chr4:4752502 1.40E-122 transposed
Cmo16g00813 Cmo-Chr16:4203499 Cmo04g00939 Cmo-Chr4:4752502 2.43E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g1243 Blo02g01188 Blo03g00275 Bda06g00180 Bda08g00428 . . . . . . . . . . . Cpe01g00797 Cpe14g00651 . . . . . . . . . . . . . . Cone3ag0883 . Cone13ag0701 . . . . . . . . . . . Bma05g00910 . Sed07g1864 Cmo04g00939 . . . . . . . Bhi11g00926 Tan01g1498 . . . . . Cla10g00714 Cam10g0706 Cec10g0733 Cco10g0716 Clacu10g0742 Cmu10g1556 Cre10g0950 . Csa03g00676 Chy06g01612 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo04g00939 . 1 293 Alfin-like Transcription Factor Family AT1G14510 71.7 6.3e-107 384.4
Cmo12g01349 . 73 313 Alfin-like Transcription Factor Family AT1G14510 69.0 2.1e-94 342.8
Cmo08g00755 CST 10 245 Alfin-like Transcription Factor Family AT1G14510 68.8 5.2e-93 338.2
Cmo05g00430 CST 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 6.8e-93 337.8
Cmo05g01413 . 9 248 Alfin-like Transcription Factor Family AT1G14510 69.3 1.5e-92 336.7
Cmo17g00678 CST 10 248 Alfin-like Transcription Factor Family AT1G14510 66.8 2.7e-89 325.9
Cmo12g00597 CST 411 641 Alfin-like Transcription Factor Family AT1G14510 66.7 5.8e-84 308.1
Cmo14g00058 CST 8 237 Alfin-like Transcription Factor Family AT1G14510 60.8 1.6e-78 290.0
Cmo04g00150 CST,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 5.2e-77 285.0
Cmo04g01181 CST,ECH 9 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.2e-76 283.9
Cmo06g00221 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 57.8 1.7e-72 270.0
Cmo16g00814 . 1 169 Alfin-like Transcription Factor Family AT1G14510 79.9 8.7e-64 241.1
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT5G26210 75.2 6.2e-110 394.4
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.6e-108 389.0
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT5G26210 73.6 2.2e-107 386.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 2.7e-97 352.4
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT5G26210 64.2 1.5e-95 346.7
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G26210 72.5 9.9e-92 334.0
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G26210 63.2 4.3e-87 318.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT5G26210 58.9 3.0e-80 295.8
Cmo04g00150 CST,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 5.1e-80 295.0
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT5G26210 58.4 7.4e-79 291.2
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 54.9 2.5e-71 266.2
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G26210 68.0 3.5e-52 202.6
Cmo12g01349 . 65 315 Alfin-like Transcription Factor Family AT3G42790 72.2 2.1e-102 369.4
Cmo05g01413 . 1 250 Alfin-like Transcription Factor Family AT3G42790 69.3 2.8e-99 359.0
Cmo05g00430 CST 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.8e-99 359.0
Cmo08g00755 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 64.1 1.5e-95 346.7
Cmo17g00678 CST 1 250 Alfin-like Transcription Factor Family AT3G42790 62.2 3.0e-93 339.0
Cmo12g00597 CST 411 643 Alfin-like Transcription Factor Family AT3G42790 67.1 1.0e-85 313.9
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT3G42790 60.6 3.7e-83 305.4
Cmo04g00150 CST,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.7e-80 296.6
Cmo04g01181 CST,ECH 9 240 Alfin-like Transcription Factor Family AT3G42790 59.9 1.5e-79 293.5
Cmo14g00058 CST 8 239 Alfin-like Transcription Factor Family AT3G42790 58.8 4.2e-79 292.0
Cmo06g00221 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 55.8 1.3e-72 270.4
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G42790 63.7 1.1e-47 187.6
Cmo04g01181 CST,ECH 1 241 Alfin-like Transcription Factor Family AT5G05610 77.3 3.1e-111 398.7
Cmo04g00150 CST,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 7.6e-110 394.0
Cmo14g00058 CST 1 240 Alfin-like Transcription Factor Family AT5G05610 76.3 1.1e-108 390.2
Cmo06g00221 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 71.0 3.9e-98 355.1
Cmo08g00755 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 65.7 2.1e-91 332.8
Cmo05g01413 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo12g01349 . 72 315 Alfin-like Transcription Factor Family AT5G05610 65.6 2.3e-90 329.3
Cmo05g00430 CST 8 252 Alfin-like Transcription Factor Family AT5G05610 64.1 8.2e-88 320.9
Cmo17g00678 CST 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 2.4e-87 319.3
Cmo12g00597 CST 424 643 Alfin-like Transcription Factor Family AT5G05610 66.4 7.5e-81 297.7
Cmo04g00939 . 9 295 Alfin-like Transcription Factor Family AT5G05610 53.0 1.3e-77 287.0
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT5G05610 57.0 7.8e-46 181.4
Cmo04g01181 CST,ECH 43 241 Alfin-like Transcription Factor Family AT3G11200 79.7 3.9e-95 345.1
Cmo04g00150 CST,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 1.1e-92 337.0
Cmo14g00058 CST 43 240 Alfin-like Transcription Factor Family AT3G11200 77.7 9.4e-89 323.9
Cmo06g00221 CST 44 239 Alfin-like Transcription Factor Family AT3G11200 72.6 5.2e-79 291.6
Cmo12g00597 CST 435 643 Alfin-like Transcription Factor Family AT3G11200 64.9 4.5e-75 278.5
Cmo08g00755 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 65.4 6.5e-74 274.6
Cmo05g01413 . 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 8.5e-74 274.2
Cmo12g01349 . 108 315 Alfin-like Transcription Factor Family AT3G11200 62.9 2.5e-73 272.7
Cmo17g00678 CST 44 250 Alfin-like Transcription Factor Family AT3G11200 63.8 4.7e-72 268.5
Cmo05g00430 CST 44 252 Alfin-like Transcription Factor Family AT3G11200 62.1 2.3e-71 266.2
Cmo04g00939 . 85 295 Alfin-like Transcription Factor Family AT3G11200 63.0 2.2e-69 259.6
Cmo16g00814 . 1 171 Alfin-like Transcription Factor Family AT3G11200 58.1 4.9e-45 178.7
Cmo04g00939 . 1 205 Alfin-like Transcription Factor Family AT2G02470 67.3 6.7e-72 268.1
Cmo05g01413 . 1 158 Alfin-like Transcription Factor Family AT2G02470 75.9 3.6e-65 245.7
Cmo12g01349 . 65 222 Alfin-like Transcription Factor Family AT2G02470 75.3 1.0e-64 244.2
Cmo05g00430 CST 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.3e-64 243.0
Cmo08g00755 CST 10 158 Alfin-like Transcription Factor Family AT2G02470 76.5 3.7e-62 235.7
Cmo17g00678 CST 10 160 Alfin-like Transcription Factor Family AT2G02470 76.2 3.7e-62 235.7
Cmo14g00058 CST 8 167 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Cmo04g01181 CST,ECH 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 9.1e-53 204.5
Cmo04g00150 CST,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 9.1e-53 204.5
Cmo06g00221 CST 8 175 Alfin-like Transcription Factor Family AT2G02470 61.8 1.2e-52 204.1
Cmo12g00597 CST 424 549 Alfin-like Transcription Factor Family AT2G02470 79.4 1.6e-52 203.8
Cmo12g01349 . 65 228 Alfin-like Transcription Factor Family AT5G20510 77.0 1.1e-71 266.9
Cmo05g00430 CST 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 7.2e-71 264.2
Cmo08g00755 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 76.4 4.0e-69 258.5
Cmo17g00678 CST 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.4e-68 255.4
Cmo05g01413 . 1 164 Alfin-like Transcription Factor Family AT5G20510 72.1 4.8e-67 251.5
Cmo04g00939 . 3 213 Alfin-like Transcription Factor Family AT5G20510 55.9 2.4e-58 222.6
Cmo12g00597 CST 411 558 Alfin-like Transcription Factor Family AT5G20510 71.6 5.4e-58 221.5
Cmo04g00150 CST,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 4.0e-53 205.3
Cmo14g00058 CST 4 157 Alfin-like Transcription Factor Family AT5G20510 61.9 7.5e-52 201.1
Cmo04g01181 CST,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.9e-51 198.4
Cmo06g00221 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.8e-50 196.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9582 PF12165 Alfin 1.30E-49 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo04g00939 Cmo_Chr04 FPKM 0.377934 0.704562 0.19126 4.221993 0.0 0.0 0.0 23.800787 26.992567 14.282941