Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo04g00948 ATGGGTGAGAACTTACCTTTCTCCATTCCATCTTCCTCCATCCGACCTCCTCATCCCATTCATTTCCCTCTTTCTGATCGTTTTCCAAGGCCTGCGAAGCTTATTACTCGACACGCCACTCATCCGATGGACGAGAGTTCAGAGAACGCCCGCGAAATTGATGGCTCTGAGAGGCAGGTGGAATCGCTGTTCTCACAGGATCGAGATTCTATATCGATGACGCTAGGGGAGCCGCTATTGCGTTCCAGTACTGCCAGGATCAGCACCACCTCTCAGCTCGCCATTGTTGGTTCCAATATCTGTCCGATTGAGAGTCTTGACTATGAGATTATCGAGAATGACCTTTTCATGCAAGACTGGAGGTCCAGAAGAAAGATCGAGATATTTCAGTATGTTATCCTCAAATGGGCACTGTGCCTTCTTATTGGTTTGGTTACAGGACTCGTTGGCTTCTTCAACAACATAGCTGTTGAGAATATTGCTGGTCGTAAACTTCTGCTGACGAACAATCTCATGCTCCAGGAAAAGTACTATCTGGCTTTTGCAGTATATGTGGGTTCCAATATTGTTTTAGCTTTTTCTGCTGCCGCGCTCTGTGCCTATATTGCTCCTGCTGCTGCAGGTTCTGGCATACCTGAGGTGAAAGCATACCTCAATGGTATAGATGCTTATTCTATATTGGCTCCAAGTACCTTATTTGTGAAGATTTTTGGCTCTATATTTGCTGTTGCCGGTGGATTTGTTGTGGGTAAGGAAGGGCCCATGGTTCATACTGGTGCGTGCATTGCCTCATTACTGGGACAAGGAGGCTCTCGCAAATACCGCTTGACCTGGAAGTGGCTGAGATACTTCAAAAATGATAGGGACAGGCGGGATTTGATCACGTGTGGTGCAGCAGCTGGTGTGGCAGCTGCCTTTCGAGCTCCAGTTGGTGGCGTTCTCTTTGCACTTGAAGAAGCTGCTTCATGGTGGAGGAGTGCTCTTCTCTGGAGGACCTTTTTCACTACTGCTGTAGTAGCCGTTGTCTTGAGGGGTTTTATGGAATTTTGCCGAGGGGGGCAATGTGGGTTATTTGGTGAAGGAGGTCTCATCATGTTTAACATTCATACAGAAAACTCCACTTATGGCACTCCAGATCTTATTGCAATTGTTTTACTTGGAGTTATTGGTGGTGTGTTTGGAAGCCTTTACAACTACCTCGTGGATAAGGTCCTTCGAACCTACAGCATCATAAATGAGAGAGGTCCTGGATCGAAAGTCATTCTTGTTGTTAGCATTTCCCTATTGACAACATGTATCTCATTTGGTCTTCCTTGGCTCTCACAATGTTTACCTTGCCCACCTCACTTGGAAGACGAATGCCCAACTGTTGGTCGCTCAGGAAACTACAAGAATTTCCAATGCCCGCCTGGCCAATATAATGATCTTGCGTCGCTATTTTTCAATACCAATGATGATGTCATCCGCAACCTGTTCACATCTGCTACTGACAAGCAATTTCAGCTCTCCTCACTTTTTATCTTCTTTACTTCTATCTATTTTCTTGGCATTATTACTTATGGCATTGCCGTGCCCTCGGGGCTCTTCATTCCTGTAATACTGGCAGGGGCCTCTTATGGTCGCATTGTAGGGAGATTATTTGGTTCAGTTGCCACTCTTGATGTCAGTCTCTATGCCCTTCTCGGAGCTGCATCCTTCCTTGGTGGCACTATGAGAATGACTGTTTCTCTATGTGTCATACTCCTTGAGCTTACTAATAACCTTTTGATGCTCCCATTACTTATGTTGGTTCTTCTAATTTCAAAGTCAGTGGCAGATATTTTTAATAAAGGTGTCTATGATCAGATTGTGAAGATGAAGGGACTACCTTTTATGGAAGCCCATGCAGAACCATTTATGAGGCAATTGGTCGCTGGTGGTGTGGCTTCTGGTCCCTTAATTACGTTCTCTGGGATTGAGAAGGTCGATAACATTATCCATGCTTTGAAAATGACGAACCACAATGGGTTTCCTGTAATTGATGAGCCACCTTTCTCAGATAGTTCAGAGCTTTGTGGGCTTGTTTTGAGGTCTCATCTACTTGTTTTGCTTAAAGAGAAAAAATTTACAAAGAAAAAGACGTCAATTAGATCAGAAATTTTGAGGAGCTTCAAAGCATATGATTTTGCAAAACCTGGTTCTGGCAAAGGAGTGAAACTGGAAGATTTGGACATCAACGAGGAGGAGATGGAAATGTTTGTTGATCTTCATCCCATCACAAATACGTCGCCTTACACAGTGGTAGAAACAATGTCTCTGGCTAAAGCAGCGATTCTCTTTCACGCTCTTGGCTTGAGGCACTTACTGGTGGTTCCGAAGACTCCCGGGAGGCCTCCTATTGCTGGAATTCTTACAAGGCATGATTTCATGCCGGAATATATTCTGGGACTTTACCCGTATCTCAACCCTCATTAG 2454 44.7 MGENLPFSIPSSSIRPPHPIHFPLSDRFPRPAKLITRHATHPMDESSENAREIDGSERQVESLFSQDRDSISMTLGEPLLRSSTARISTTSQLAIVGSNICPIESLDYEIIENDLFMQDWRSRRKIEIFQYVILKWALCLLIGLVTGLVGFFNNIAVENIAGRKLLLTNNLMLQEKYYLAFAVYVGSNIVLAFSAAALCAYIAPAAAGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFAVAGGFVVGKEGPMVHTGACIASLLGQGGSRKYRLTWKWLRYFKNDRDRRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFMEFCRGGQCGLFGEGGLIMFNIHTENSTYGTPDLIAIVLLGVIGGVFGSLYNYLVDKVLRTYSIINERGPGSKVILVVSISLLTTCISFGLPWLSQCLPCPPHLEDECPTVGRSGNYKNFQCPPGQYNDLASLFFNTNDDVIRNLFTSATDKQFQLSSLFIFFTSIYFLGIITYGIAVPSGLFIPVILAGASYGRIVGRLFGSVATLDVSLYALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLLMLVLLISKSVADIFNKGVYDQIVKMKGLPFMEAHAEPFMRQLVAGGVASGPLITFSGIEKVDNIIHALKMTNHNGFPVIDEPPFSDSSELCGLVLRSHLLVLLKEKKFTKKKTSIRSEILRSFKAYDFAKPGSGKGVKLEDLDINEEEMEMFVDLHPITNTSPYTVVETMSLAKAAILFHALGLRHLLVVPKTPGRPPIAGILTRHDFMPEYILGLYPYLNPH 817
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4837882 4845665 - CmoCh04G009480.1 Cmo04g00948 379923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo04g00948 817 SUPERFAMILY Clc chloride channel 112 627 IPR014743 -
Cmo04g00948 817 Pfam CBS domain 754 802 IPR000644 -
Cmo04g00948 817 Gene3D - 651 789 IPR046342 -
Cmo04g00948 817 PRINTS Plant CLC chloride channel signature 352 359 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g00948 817 PRINTS Plant CLC chloride channel signature 109 117 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g00948 817 PRINTS Plant CLC chloride channel signature 320 328 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g00948 817 PRINTS Plant CLC chloride channel signature 334 344 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g00948 817 PRINTS Plant CLC chloride channel signature 476 492 IPR002251 GO:0005247|GO:0006821|GO:0016020
Cmo04g00948 817 PRINTS Chloride channel signature 524 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 556 572 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 204 221 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 612 626 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 574 593 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 235 254 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PRINTS Chloride channel signature 299 318 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 ProSiteProfiles CBS domain profile. 752 813 IPR000644 -
Cmo04g00948 817 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 70 817 - -
Cmo04g00948 817 SUPERFAMILY CBS-domain pair 629 804 IPR046342 -
Cmo04g00948 817 CDD CBS_pair_voltage-gated_CLC_euk_bac 628 805 - -
Cmo04g00948 817 Pfam Voltage gated chloride channel 192 606 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Cmo04g00948 817 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 70 817 - -
Cmo04g00948 817 Gene3D Clc chloride channel 127 626 - -
Cmo04g00948 817 CDD ClC_6_like 104 625 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00948 Cmo16g00824 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00948 Cmo-Chr4:4837882 Cmo17g00235 Cmo-Chr17:1386457 0 dispersed
Cmo04g03081 Cmo-Chr4:21488862 Cmo04g00948 Cmo-Chr4:4837882 0 transposed
Cmo12g01212 Cmo-Chr12:10836397 Cmo04g00948 Cmo-Chr4:4837882 0 transposed
Cmo15g00081 Cmo-Chr15:411910 Cmo04g00948 Cmo-Chr4:4837882 0 transposed
Cmo16g00824 Cmo-Chr16:4330802 Cmo04g00948 Cmo-Chr4:4837882 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo04g00948 K05016 - csv:101209987 1323.15